New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4317917 =NA (NA)12 (0.090) 5/164 NT NA noncoding (1/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4317949 = NA (NA)noncoding (33/83 nt) REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

GGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4318021‑4317917
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACG  >  NC_000913/4317949‑4318046
                                                                                                                                                                                                           
GGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCAT                                                                                                         >  1:634118/1‑100
 GTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATC                                                                                                        >  2:2589108/1‑100
 GTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATC                                                                                                        <  2:477853/100‑1
  TTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCC                                                                                                       <  1:3862718/100‑1
  TTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCC                                                                                                       <  1:1945745/100‑1
   TTTGCAGAATTGAGCCGGTGCCGGATGTGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCG                                                                                                      <  1:3180129/100‑1
   TTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCG                                                                                                      <  1:2298403/100‑1
   TTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCG                                                                                                      >  1:3844184/1‑100
     TGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC                                                                                                    >  1:2588905/1‑100
     TGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC                                                                                                    <  2:3844699/100‑1
                                                                   CCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAAT                                      >  2:1244686/1‑100
                                                                         GTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA                                >  2:3587064/1‑100
                                                                         GTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA                                >  1:256009/1‑100
                                                                         GTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA                                >  1:834631/1‑100
                                                                           CGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAA                              >  2:4126999/1‑100
                                                                           CGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTG                                  >  2:3981431/1‑96
                                                                            GGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGCGCGCATTTGTAGGCCGGATCAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAA                             >  2:2195075/1‑100
                                                                            GGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAA                             >  1:1653888/1‑100
                                                                            GGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAA                             >  1:1168071/1‑100
                                                                             GATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAC                            >  1:1853569/1‑100
                                                                             GATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAC                            >  1:968114/1‑100
                                                                             GATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAACTCTGCAAAAC                            >  2:67343/1‑100
                                                                                                   TCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGT       <  1:3587407/99‑1
                                                                                                    CCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTAT     >  1:3342714/1‑100
                                                                                                    CCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTAT     >  1:2411799/1‑100
                                                                                                      GACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATAC   >  1:1417479/1‑100
                                                                                                       ACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACG  <  1:2107383/100‑1
                                                                                                       ACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACG  <  1:1581408/100‑1
                                                                                                        CCTACGGCGCGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGCACCGGCGCAATTCTGCAAAACCGATGACCCCAGCAGCTGTGTATAC   <  2:3691129/98‑1
                                                                                                                                                                                                           
GGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4318021‑4317917
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACG  >  NC_000913/4317949‑4318046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.