| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4415961 | NA (NA) | 20 (0.150) | 11/166 | NT | NA | noncoding (4/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4415991 | NA (NA) | noncoding (34/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4415863‑4415961‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTC < NC_000913/4415991‑4415887 ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG < 1:1274490/100‑1ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG < 1:3412510/100‑1ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG < 1:2821424/100‑1ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG > 1:2032854/1‑100 TTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGC < 1:2025042/100‑1 TTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATAAGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGC < 2:3021563/100‑1 TTTATTGCTGCGGGCGACGGGGGGAGGGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG < 2:3646181/99‑1 TTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCC < 2:1479993/100‑1 TATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG < 1:1785941/100‑1 TATTGCTGCGGGCGACGGGGGGAGCGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG > 2:2614138/1‑100 ATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG < 2:970494/100‑1 GTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCC < 2:1088236/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 1:1356815/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 1:1006227/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 2:240765/100‑1 GTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCC < 2:3056596/100‑1 TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTACATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGCGCGCCTTGTCCGGCC < 2:944449/99‑1 TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCT < 1:3844322/100‑1 TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCT < 1:995334/100‑1 GTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCT < 2:4095791/99‑1 TGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTAC < 1:1503831/100‑1 TGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTAC < 1:1150419/100‑1 GTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACA < 2:2908421/100‑1 AAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGATCGCCTTGTCCGGCCTACAAT < 2:2534576/100‑1 AAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAAT < 2:856293/100‑1 AAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAAT < 1:459889/100‑1 AAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAAT < 1:3386542/100‑1 GCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTT < 1:2401312/100‑1 TATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCA < 1:3191130/100‑1 CTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAA < 1:1293984/100‑1 GAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATAC > 1:58175/1‑100 GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACA < 1:1335246/100‑1 GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACA > 1:1031333/1‑100 ATGCGTCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTC < 2:2388051/100‑1 ATTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4415863‑4415961‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACTC < NC_000913/4415991‑4415887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |