| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4415962 = | NA (NA) | 15 (0.110) | 8/166 | NT | NA | noncoding (5/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4415992 = | NA (NA) | intergenic (+92/+25) | aidB/yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein | |||||
GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416064‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTAC > NC_000913/4415992‑4416089 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC > 1:1380896/1‑100GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCC > 2:1294045/1‑100 ACCAGCATCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCG < 2:739963/100‑1 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG < 2:2613403/100‑1 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 1:3750578/1‑100 CCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGG > 1:306309/1‑100 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACGGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC > 2:2644246/1‑100 CAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 1:2487221/100‑1 CAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTT > 1:1614846/1‑100 TGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACCGTCTCGCCTGTACGCGCCAGTTATCA > 1:3448798/1‑100 TGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCA > 1:3449081/1‑100 GAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAG > 1:2214494/1‑100 AACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGG > 1:252761/1‑100 ACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGC > 2:219485/1‑100 CAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCT > 1:3504499/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:3418391/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 1:811052/1‑100 AATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:2575500/1‑100 ATGCCGGATGTGGCGCGAGCGCCTTGTCCGGCATGGTTCATTTGCTGTAGATGACACTCCTGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTG > 2:2414487/1‑99 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 1:3211013/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 1:2995419/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 2:3204512/1‑100 ATGCCGGATGCGGCGCGAGCGCCTTGTCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGC > 2:3670521/1‑100 TCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCG < 1:1114355/100‑1 CCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGn < 2:2853191/100‑2 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT > 1:3252058/1‑100 CGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGT > 1:1710479/1‑100 GGCATTGTTCATTTGCTGTAGCTGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCCGGCTGCTGGTCTTCCTACATGGTAATAATGCGGT > 1:2051703/1‑99 GGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCTCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTA > 1:994212/1‑100 GCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTAC < 2:3937151/100‑1 GACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATGAGTGTCATCTACAGCAAATGAACAATGCCGGATGCGGCGCGAGCGCCTTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4416064‑4415962‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTAC > NC_000913/4415992‑4416089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |