| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4554509 = | NA (NA) | 8 (0.060) | 7/164 | NT | NA | noncoding (5/34 nt) | REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4554539 = | NA (NA) | intergenic (+178/‑37) | uxuB/uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor | |||||
CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4554612‑4554509‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCT > NC_000913/4554539‑4554637 CCTGGTACGGTCTTTGCGCAGAGGCGGCAGCTTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCCAATTTTTGCCGGATGCGGCGTGAACGCCTTATC > 2:1995921/1‑100CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATC > 1:47757/1‑100CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATC > 1:20767/1‑100CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATC < 2:3254624/100‑1CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATC < 1:2381686/100‑1CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATC < 1:3381933/100‑1 TGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCG > 1:2989526/1‑100 GGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCtg < 1:2801983/100‑3 GGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCGG > 2:1797579/1‑100 GGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCGG > 1:2938090/1‑100 GTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCGGC > 1:1313046/1‑100 AAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAA < 1:1658917/100‑1 GCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGAT < 2:2536831/100‑1 TCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTCTCCTGCAAAAATTTGATTACCCCCACCTCACGGACACCACAC > 2:3167018/1‑94 TCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCAGGCAAAAATGTGATTAACCGCACCTCACAGACACAACACAATGAAATATGCCACCTCTGCGC > 2:3923014/1‑99 TTTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCT > 1:1273082/1‑100 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTT > 1:2679889/1‑100 TGCCGGATGCGGCGTGAACGCCTTATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTA > 1:965458/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTAC > 1:753032/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTAC > 2:1343746/1‑100 ATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGACACCTCTGCTGAAAGACCTTCCAAGGAAGACGGGGCGATCATCCG > 2:3579288/1‑100 TCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGC < 1:786750/100‑1 CCGGCAAAAAGTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCG < 2:2104640/100‑1 CGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCATCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGA < 2:668061/100‑1 CGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGA > 1:237679/1‑100 CGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGA > 2:416952/1‑100 GGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGAT < 2:1573321/100‑1 GGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGAT > 2:1133546/1‑100 GGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGAT > 1:1903018/1‑100 GGCAAAAAGTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGAT < 2:3417141/100‑1 GCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATC < 2:1246309/100‑1 GCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATC < 1:93687/100‑1 GCAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGAGGCGATGATCCGCGAT > 2:3807576/1‑99 CAAAAATTTGATTAACCGCACCTAACGGACACAACTCCATTAAATCGGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCT < 1:3501852/100‑1 CAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCT < 1:677544/100‑1 CAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCT < 1:3617836/100‑1 CCTGGTAAGGTCTTTGCGCAGAGGTGGCAGATTTCATGGTGTTGTGTCCGTTAGGTGCGGTTAATCAAATTTTTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4554612‑4554509‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAAAATTTGATTAACCGCACCTAACGGACACAACACCATGAAATCTGCCACCTCTGCGCAAAGACCTTACCAGGAAGTCGGGGCGATGATCCGCGATCT > NC_000913/4554539‑4554637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |