New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4632232	157 (1.060)	9 (0.060)	6/170	NT	5.6%	coding (1500/1938 nt)	slt	lytic murein transglycosylase, soluble
	?	NC_000913	= 4632249	156 (1.110)					coding (1517/1938 nt)	slt	lytic murein transglycosylase, soluble
Rejected: Frequency below cutoff threshold.

AAGCTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4632131‑4632232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGCTCT  <  NC_000913/4632249‑4632151                                                                                                                                                                                                           AAGCTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGG                                                                                                       <  1:2672550/100‑1  AGCTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGC                                                                                                      <  2:208193/100‑1  AGCTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGC                                                                                                      <  2:1945313/100‑1    CTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACATCCTTCTTTTCAAACGCTACACCAGCGGTAAGAAAATCCCGCAAAGCTATGCGATG                                                                                                        >  2:199168/1‑96    CTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACAACGATCTTTTCAGACGCTACACCAGCGGTAAGGAGATCCCGCAACGCCATGCGATGGCGC                                                                                                    >  2:784279/1‑100                      GAGCGATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCG                                                                                  <  2:1085226/100‑1                          GATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCAT                                                                              <  1:1605139/100‑1                          GATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCAT                                                                              <  2:2594197/100‑1                          GATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCAT                                                                              <  2:3096583/100‑1                           ATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCATC                                                                             <  1:293512/100‑1                           ATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCATC                                                                             <  2:2935050/100‑1                            TTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCATCG                                                                            <  2:1461762/100‑1                                 GCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCGCTCTCCTGACGAGCAATCGCCATCGCATAG                                                                       <  2:212589/100‑1                                                                       GTAAGGAGATCCCGCAAAGCTACGCGATGGCGCTCTCCTGACGAGTAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAA                                 <  1:784285/100‑1                                                                                                   GGCGCTCTCCTGACGAGCAATCGCGATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGC     <  1:2331913/100‑1                                                                                                   GGCGCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGC     <  1:3697978/100‑1                                                                                                   GGCGCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGC     <  1:767705/100‑1                                                                                                     CGCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGCTC   <  1:2818662/100‑1                                                                                                      GCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGCTCT  <  1:3837989/100‑1                                                                                                      GCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGCTCT  <  1:2504693/100‑1                                                                                                                                                                                                           AAGCTGTGGGATCATCTGGAAGAGCGATTCCCGCTGGCTTACAACGATCTTTTCAAACGCTACACCAGCGGTAAGGAGATCCCGCAAAGCTATGCGATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4632131‑4632232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgCTCTCCTGACGAGCAATCGCCATCGCATAGCTTTGCGGGATCTCCTTACCGCTGGTGTAGCGTTTGAAAAGATCGTTGTAAGCCAGCGGGAATCGCTCT  <  NC_000913/4632249‑4632151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.