New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	792268 =	NA (NA)	10 (0.070)	6/164	NT	NA	noncoding (5/34 nt)	REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	792298 =	NA (NA)					intergenic (‑243/+18)	galE/modF	UDP‑galactose‑4‑epimerase/molybdate ABC transporter ATPase

TCTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/792373‑792268 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccgg‑cAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG  >  NC_000913/792298‑792395                                                                                                                                                                                                               TCTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTC                                                                                                           >  1:3252797/1‑100    TGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCC                                                                                                        <  1:1157371/100‑1     GAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCG                                                                                                       <  1:515724/100‑1     GAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCG                                                                                                       <  1:254256/100‑1      AGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG                                                                                                      >  2:852829/1‑100       GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑C                                                                                                    >  1:1948109/1‑100       GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑C                                                                                                    <  1:1834978/100‑1       GTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑C                                                                                                    <  2:30993/100‑1                                                                     CTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCG                                      >  1:242008/1‑100                                                                       GACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGC                                    >  1:94815/1‑100                                                                        ACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCA                                   >  1:4104428/1‑100                                                                         CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCA                                   >  2:508390/1‑100                                                                         CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC                                  >  1:2023876/1‑100                                                                         CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC                                  >  1:3416061/1‑100                                                                         CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC                                  >  1:1825045/1‑100                                                                         CCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAC                                  >  2:1454888/1‑100                                                                          CTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACG                                 >  1:3781073/1‑100                                                                           TTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACAAAGCGATAGAGTCCACCGTCCGGCACGA                                >  1:1411380/1‑100                                                                                                     TCCGG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCA      >  2:2837481/1‑100                                                                                                        GG‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGC   <  1:2347373/100‑1                                                                                                         G‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG  >  2:2282149/1‑100                                                                                                         G‑CAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG  <  1:599926/100‑1                                                                                                                                                                                                               TCTTGAGTTCGTGCCGGACGGTGGACTCTATCGCTATGTGCTGACAAAAATATATTGAGTCGGTAGTGCTGACCTTGCCGGAGGCGGCCTTAGCACCCTCTCCGG‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/792373‑792268 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccgg‑cAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCG  >  NC_000913/792298‑792395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.