New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 912309	117 (0.790)	21 (0.150)	8/164	NT	16.2%	coding (1506/1653 nt)	hcp	hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases
	?	NC_000913	= 912330	110 (0.810)					coding (1485/1653 nt)	hcp	hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases

ATAGAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/912205‑912309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaagcGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGCT  <  NC_000913/912330‑912232                                                                                                                                                                                                              ATAGAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAG                                                                                                          <  2:2748531/100‑1 ATAGAACGCAGGCCGAATGTCTCGTTCAGCACCGCTAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGA                                                                                                           <  2:256006/99‑1  TAGAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGA                                                                                                         >  2:3233913/1‑100   AGAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAA                                                                                                        <  1:279074/100‑1    GAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAA                                                                                                       >  1:4017494/1‑100    GAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAA                                                                                                        >  1:2287821/1‑99      ACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGC                                                                                                     >  2:1858110/1‑100      ACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGC                                                                                                     <  1:4084603/100‑1      ACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGC                                                                                                     <  1:2927494/100‑1                              CACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCT                                                                             >  1:903332/1‑100                                 CGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTC                                                                          <  1:241852/100‑1                                    CAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCTGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCT                                                                       <  2:841242/100‑1                                    CAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCT                                                                       <  1:131284/100‑1                                    CAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCT                                                                       <  1:168248/100‑1                                     AGCAGTTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTG                                                                      <  1:1510366/100‑1                                     AGCAGGTCTGGTGTCAGGAAACCATGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTG                                                                      <  2:962663/100‑1                                     AGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTG                                                                      <  1:1504570/100‑1                                     AGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTG                                                                      <  2:1698836/100‑1                                     AGCAGGGCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTG                                                                      <  1:1811679/100‑1                                      GCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGG                                                                     <  1:490145/100‑1                                      GCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTG                                                                      <  2:1015787/99‑1                                       catgtaTGGTGTCAGGAAACCAGGTGCATTCGGGCCGGTGACGATATTGTGCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGG                                                                    <  1:4003462/94‑1                                       CAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGG                                                                    <  1:3842969/100‑1                                       CAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGG                                                                    <  1:3955706/100‑1                                       CAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGG                                                                    <  1:2540054/100‑1                                       CAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGG                                                                    <  2:903326/100‑1                                         GGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCG                                                                  <  1:3256618/100‑1                                         GGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCG                                                                  <  1:3256821/100‑1                                         GGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGC                                                                   <  1:1662736/99‑1                                            CTGCTGTCAGGAAACCCGGTGCAGTCCGGCCCGTGCCGATATTTTTCACGCCCAGAGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGC                                                                   <  2:3859914/96‑1                                                                                                   AGAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGC        <  1:1967587/100‑1                                                                                                    GAAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCG       >  1:1461364/1‑100                                                                                                     AAAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGG      <  1:3009570/100‑1                                                                                                      AAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGCCCTGCTGGCGGT     >  1:1368378/1‑100                                                                                                      AAGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGG      >  1:2166754/1‑99                                                                                                       AGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTG    <  1:3690781/100‑1                                                                                                       AGCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGCGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTG    >  1:1168484/1‑100                                                                                                        GCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGC   <  2:2232112/100‑1                                                                                                        GCGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGC   <  1:78268/100‑1                                                                                                         CGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGCT  <  2:4094528/100‑1                                                                                                         CGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGCT  >  2:20898/1‑100                                                                                                         CGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCCGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGC   <  2:1528903/99‑1                                                                                                         CGAGCGTCATTCTGCTGACGCTGCTTGCTCTGGGCGGGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGCT  <  2:3784646/100‑1                                                                                                                                                                                                              ATAGAACGCAGGCCGAATTTCTCGTTCAGCACCGCCAGCAGGTCTGGTGTCAGGAAACCAGGTGCAGTCGGGCCGGTGACGATATTTTTCACGCCCAGAGAAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/912205‑912309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaagcGATCGTCATTCTGCTGACGCTGCTTTCTCTGGGCGTGAAAAATATCGTCACCGGCCCGACTGCACCTGGTTTCCTGACACCAGACCTGCTGGCGGTGCT  <  NC_000913/912330‑912232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.