New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1269275NA (NA)22 (0.160) 7/162 NT 19.6% coding (1/108 nt) ldrA toxic polypeptide, small
?NC_000913 = 1269313 99 (0.670)intergenic (‑38/+390) ldrA/ldrB toxic polypeptide, small/toxic polypeptide, small

GTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATatagccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269177‑1269275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATT  <  NC_000913/1269313‑1269207
                                                                                                                                                                                                              
GTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATA                                                                                                            <  1:2546858/100‑1
 nTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTAGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATA                                                                                                            >  2:2853076/2‑99
 TTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATAT                                                                                                           <  1:2538260/100‑1
  TACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATA                                                                                                          >  2:113365/1‑100
  TACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATA                                                                                                          >  2:456699/1‑100
   ACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAG                                                                                                         <  1:2815682/100‑1
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:1292299/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:748403/1‑100
    CGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGC                                                                                                        >  1:1965327/1‑100
    CGCCACCAGCTGACAATCGCGGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATA                                                                                                          <  1:930317/98‑1
     GCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCC                                                                                                       <  2:919820/100‑1
      CCACCAGCTGACAATCTCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAG                                                                                                         <  2:154009/97‑1
      CCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGAGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCG                                                                                                      >  2:1895612/1‑100
       CACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGC                                                                                                     <  1:1368911/100‑1
                                     CCCGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTgt                                                                       <  1:2784645/100‑3
                                      CCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  1:1101286/100‑1
                                      CCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTA                                                                        <  2:3273861/98‑1
                                      CCGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  1:91528/100‑1
                                      CCGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      <  1:2787127/100‑1
                                      CCGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATA                                                                      >  2:3922335/1‑100
                                       CGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  1:3922361/100‑1
                                       CGCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  2:1232839/100‑1
                                        GCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATG                                                                    <  1:943913/100‑1
                                        GCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATG                                                                    <  2:1605641/100‑1
                                        GCCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATG                                                                    <  1:648295/100‑1
                                         CCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGA                                                                   <  1:3173857/100‑1
                                         CCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGA                                                                   <  1:3900911/100‑1
                                         CCAGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGA                                                                   <  2:65526/100‑1
                                          CAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGAC                                                                  <  1:3610475/100‑1
                                          CAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGAC                                                                  <  2:1511113/100‑1
                                           atGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATAT                                                                     <  2:1717439/94‑1
                                           AGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACG                                                                 <  1:651422/100‑1
                                           AGGATCGGTGCCGCCAGGTCGTGCCAGAAAGTCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACG                                                                 <  2:4067975/100‑1
                                            GGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGC                                                                <  1:1410973/100‑1
                                            GGATCGGTGCTGACAGGTCGTGTCAGAAAATCATGGCAAACTGAGCGAGCGTCATATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGC                                                                <  1:1237330/100‑1
                                                       GCCAGGTCGTGCCAGAAAATCATGTCAAACTGCGCGAGCGTCATATAGCCGC‑‑CTTGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGC                                                   <  2:2330400/100‑1
                                                                                                   ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGG         <  1:212596/100‑1
                                                                                                   ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGG         <  1:2202557/100‑1
                                                                                                   ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGG         <  2:2730300/100‑1
                                                                                                   ATAGCCGCAAAATGTAGTCATTACAACAAGCCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACATGGCAGCACCGATCCTGGCGGG         <  2:2446297/100‑1
                                                                                                     AGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAA       <  2:3787437/100‑1
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      <  2:950204/100‑1
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:3046786/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      <  1:280265/100‑1
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:1104168/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:1783012/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:1308199/1‑100
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTAGCACCGCCGATCCcgccgcgga       >  1:3223448/1‑90
                                                                                                      GCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGAACGACCTGGCAGCACCGATCCTGGCGGGAAT      >  1:1104075/1‑100
                                                                                                       CCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATT     <  1:1291726/100‑1
                                                                                                       CCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCACGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATT     >  2:2638975/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    >  2:1582932/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    >  1:434168/1‑100
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    <  1:3826429/100‑1
                                                                                                        CGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTA    <  1:2028724/100‑1
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   >  1:600146/1‑100
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   >  1:2002076/1‑100
                                                                                                         GCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTAT   <  1:2188903/100‑1
                                                                                                          CAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATT  <  1:2783413/100‑1
                                                                                                                                                                                                              
GTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATatagccgc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1269177‑1269275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAGCCGCAAAATGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATT  <  NC_000913/1269313‑1269207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.