New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1357754 = | NA (NA) | 7 (0.050) | 4/160 | NT | NA | intergenic (‑86/+48) | ymjA/puuP | DUF2543 family protein/putrescine importer |
? | NC_000913 | 1357793 = | NA (NA) | noncoding (24/30 nt) | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences |
CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1357861‑1357754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCT > NC_000913/1357793‑1357889 CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG > 1:1499595/1‑100 CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG > 1:3176694/1‑100 CGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGC < 2:1694559/100‑1 CGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGC > 2:1767243/1‑100 GCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCC > 1:1500102/1‑100 CTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCG < 1:1947079/100‑1 tgTCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGC > 1:3834720/3‑100 ATCGCAAAGTGCCGTTTTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGCTGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG < 2:2797418/100‑1 ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG < 1:3138557/100‑1 ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG < 2:3346289/100‑1 ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG > 1:1483657/1‑100 ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATCATCCTGCCTGAGGGTAACGCGCCGCG < 1:123517/100‑1 TCGCAAAGTGCCGTTGTATGATGGTGGCAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG < 2:4134631/99‑1 GGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTT > 1:855935/1‑100 CGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGct > 1:1542318/1‑98 CGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGAT > 1:3409207/1‑100 CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAG > 1:3493925/1‑100 CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAG > 1:93135/1‑100 CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCATACTGTCACCATCATACAACGGCCCATTGCagt > 2:938603/1‑95 GGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACACCGGCACTTTGCGATAGC > 2:3421229/1‑100 GCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCG > 1:2899349/1‑100 GCGCCGCGCATCCGACTATTACCTTTCACTCTCCGGCCTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCG < 2:2784203/100‑1 GCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCC > 1:2756499/1‑100 GCCGCGCAGCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCAGATCAGATACCATAAATATGCGCC < 2:2294924/100‑1 gctCATCCTAATATTACGTGTCACTCAGCGGCGTTCTGTCACCATCATACAACGGCACGTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 2:1283404/97‑1 GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCCTACCACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 1:4101582/100‑1 GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 2:1261183/100‑1 GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC < 1:2271998/100‑1 CGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCT < 1:459582/100‑1 CATCCGACTATTACGTTTCACTCAACGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATTAGATACCATAAATATGCGCCG > 2:421820/1‑95 CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1357861‑1357754 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCT > NC_000913/1357793‑1357889 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |