New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1357754 =NA (NA)7 (0.050) 4/160 NT NA intergenic (‑86/+48) ymjA/puuP DUF2543 family protein/putrescine importer
?NC_000913 1357793 = NA (NA)noncoding (24/30 nt) REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences

CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1357861‑1357754
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCT  >  NC_000913/1357793‑1357889
                                                                                                                                                                                                             
CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG                                                                                                           >  1:1499595/1‑100
CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACG                                                                                                           >  1:3176694/1‑100
   CGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGC                                                                                                        <  2:1694559/100‑1
   CGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGC                                                                                                        >  2:1767243/1‑100
    GCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCC                                                                                                       >  1:1500102/1‑100
     CTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCG                                                                                                      <  1:1947079/100‑1
      tgTCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGC                                                                                                     >  1:3834720/3‑100
       ATCGCAAAGTGCCGTTTTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGCTGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG                                                                                                    <  2:2797418/100‑1
       ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG                                                                                                    <  1:3138557/100‑1
       ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG                                                                                                    <  2:3346289/100‑1
       ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG                                                                                                    >  1:1483657/1‑100
       ATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATCATCCTGCCTGAGGGTAACGCGCCGCG                                                                                                    <  1:123517/100‑1
        TCGCAAAGTGCCGTTGTATGATGGTGGCAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCG                                                                                                    <  2:4134631/99‑1
                                                                 GGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTT                                          >  1:855935/1‑100
                                                                      CGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGct                                     >  1:1542318/1‑98
                                                                      CGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGAT                                     >  1:3409207/1‑100
                                                                        CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAG                                   >  1:3493925/1‑100
                                                                        CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAG                                   >  1:93135/1‑100
                                                                        CGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCATACTGTCACCATCATACAACGGCCCATTGCagt                                     >  2:938603/1‑95
                                                                         GGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACACCGGCACTTTGCGATAGC                                  >  2:3421229/1‑100
                                                                                                   GCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCG        >  1:2899349/1‑100
                                                                                                   GCGCCGCGCATCCGACTATTACCTTTCACTCTCCGGCCTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCG        <  2:2784203/100‑1
                                                                                                     GCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCC      >  1:2756499/1‑100
                                                                                                     GCCGCGCAGCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCAGATCAGATACCATAAATATGCGCC      <  2:2294924/100‑1
                                                                                                        gctCATCCTAATATTACGTGTCACTCAGCGGCGTTCTGTCACCATCATACAACGGCACGTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC   <  2:1283404/97‑1
                                                                                                        GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCCTACCACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC   <  1:4101582/100‑1
                                                                                                        GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC   <  2:1261183/100‑1
                                                                                                        GCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCC   <  1:2271998/100‑1
                                                                                                         CGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCT  <  1:459582/100‑1
                                                                                                           CATCCGACTATTACGTTTCACTCAACGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATTAGATACCATAAATATGCGCCG     >  2:421820/1‑95
                                                                                                                                                                                                             
CGCCGCTATCGCAAAGTGCCGTTGTATGATGGTGACAGAACGCCGGTGAGTGAAACGTAATAGTCGGATGCGCGGCGCATTATCCTGCCTGAGGGTAACGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1357861‑1357754
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcgcATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCT  >  NC_000913/1357793‑1357889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.