New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2842423 =NA (NA)15 (0.110) 8/164 NT NA noncoding (1/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2842453 = NA (NA)noncoding (31/79 nt) REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 233 total aligned reads displayed.

CGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGA  >  NC_000913/2842324‑2842522
                                                                                                   |                                                                                                   
cgCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTg                                                                                                     >  1:990496/1‑100 (MQ=255)
  gggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGcc                                                                                                   <  2:886129‑M1/3‑1 (MQ=255)
  gggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGc                                                                                                    <  1:3405830‑M1/2‑1 (MQ=255)
  cAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGcc                                                                                                   <  2:1868194/100‑1 (MQ=255)
   ggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCg                                                                                                  <  1:1260481‑M1/4‑1 (MQ=255)
   ggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCg                                                                                                  >  1:132726‑M1/97‑100 (MQ=255)
   ggatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCg                                                                                                  <  2:731661‑M1/4‑1 (MQ=255)
    ggCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCgg                                                                                                 <  1:1193328/100‑1 (MQ=255)
    ggCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCgg                                                                                                 >  1:396475/1‑100 (MQ=255)
    gatgttcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCg                                                                                                  >  2:3949287‑M1/96‑99 (MQ=255)
     cggatcttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGa                                                                                                >  1:1252479‑M1/95‑100 (MQ=255)
      tgttcttgatagggtgaaccagctctgatgccaaatgctaaattgccagatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCgg                                                                                                 <  2:22249‑M1/5‑1 (MQ=255)
          cttgatggggtgaaccagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATgcgg                                                                                           <  1:3852570‑M1/11‑1 (MQ=255)
             aCGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGt                                                                                        >  2:3829579/1‑100 (MQ=255)
              cGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTg                                                                                       <  1:1886644/100‑1 (MQ=255)
              cGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTg                                                                                       >  1:184358/1‑100 (MQ=255)
              cGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTg                                                                                       <  1:512596/100‑1 (MQ=255)
              cGCTGACGCGCACGCGTAAGAAATCATGCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGt                                                                                        <  2:2012479/99‑1 (MQ=255)
               gCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGa                                                                                      >  1:967071/1‑100 (MQ=255)
               gCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGa                                                                                      <  1:269560/100‑1 (MQ=255)
               gCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGa                                                                                      <  1:3302771/100‑1 (MQ=255)
                  gACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACg                                                                                   <  1:3489864/100‑1 (MQ=255)
                    cgcgCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGcc                                                                                 >  2:2067606/1‑100 (MQ=255)
                     gcgcACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCt                                                                                <  2:3107485/100‑1 (MQ=255)
                        cACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTAt                                                                             >  2:69652/1‑100 (MQ=255)
                        cACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTAt                                                                             >  1:156940/1‑100 (MQ=255)
                        cACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTAt                                                                             >  1:1032737/1‑100 (MQ=255)
                         cagctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCCGATGCGGCGTGAACGCCTTATc                                                                            >  2:2788094‑M1/75‑100 (MQ=255)
                          cgcgTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATcc                                                                           <  1:798508/100‑1 (MQ=255)
                          cgcgTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATc                                                                            >  2:1575499/1‑99 (MQ=255)
                           gctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCg                                                                          >  1:3926406‑M1/73‑100 (MQ=255)
                           gctctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCg                                                                          >  1:1062310‑M1/73‑100 (MQ=255)
                             tctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                        >  2:1147820‑M1/71‑100 (MQ=255)
                             tctgatgccaaatgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                        >  1:1451453‑M1/71‑100 (MQ=255)
                             gTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                        >  1:2331405/1‑100 (MQ=255)
                              tAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                       <  1:3017631/100‑1 (MQ=255)
                              tAAGAAATCATTCTGGTGGTATAAAAAAGTGATGGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                       <  2:473703/100‑1 (MQ=255)
                              tAAGAAATCATTCTGGTGGTATAAAAAAGTGATAGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGGCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                       >  2:2488437/1‑100 (MQ=255)
                               tgatgccaaatgctaaattgcccgatgcgctgcgtttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                      >  2:738841‑M1/69‑100 (MQ=255)
                               aaGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                      <  1:2118216/100‑1 (MQ=255)
                               aaGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt                                                                      <  1:3665732/100‑1 (MQ=255)
                                  aaaTCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa                                                                   <  1:444906/100‑1 (MQ=255)
                                   aaTCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGGGGGAACGCCTTATCCGGCCTACa                                                                   >  2:3782327/1‑99 (MQ=255)
                                   aaTCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAt                                                                  <  2:643821/100‑1 (MQ=255)
                                    aTCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATg                                                                 >  1:931487/1‑100 (MQ=255)
                                     tCATTCAGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGt                                                                >  1:1146668/1‑100 (MQ=255)
                                       aTTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCg                                                              >  1:2583229/1‑100 (MQ=255)
                                       aTTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCg                                                              >  2:1538442/1‑100 (MQ=255)
                                       aTTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCg                                                              >  1:2464974/1‑100 (MQ=255)
                                        tgttggtggTATAAAAAAGTGATTGCCAATAATGGGGAAGATTTAGAGTAGGTTACAGGGCCGGAGGCGGGGTGAACGCCTTATCCGGCGTACACGTCGc                                                             <  2:2287371/97‑1 (MQ=37)
                                        atgctaaattgcccgatgcgctgcgcttatcgggccttcatggttcgtgcgacatgtagGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGc                                                             >  2:3239812‑M1/60‑100 (MQ=255)
                                         tgtaggggtATAGAAGAGTGGGTGGGAGTAATGGGTAATTTTTATGCGAGGTAACAGTGCCGGATGTGGCGTGATCGCTTTATCCGGCTTACATggc                                                               <  2:171588/91‑3 (MQ=255)
                                         tCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCa                                                            <  1:2231886/100‑1 (MQ=255)
                                          cTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCAc                                                           <  2:4104955/100‑1 (MQ=255)
                                            ggtggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGa                                                         >  1:1676908/1‑100 (MQ=255)
                                              tggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAc                                                       <  1:585600/100‑1 (MQ=255)
                                              tggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAc                                                       <  1:378226/100‑1 (MQ=255)
                                               ggtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAAcc                                                      <  2:3296369/100‑1 (MQ=255)
                                                gtATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCa                                                     <  1:388658/100‑1 (MQ=255)
                                                 tataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCAt                                                    >  2:1407238/1‑100 (MQ=255)
                                                 tataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCAt                                                    >  1:1077682/1‑100 (MQ=255)
                                                 tataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCAt                                                    >  2:3899818/1‑100 (MQ=255)
                                                  ataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATg                                                   >  1:886135/1‑100 (MQ=255)
                                                  ataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATg                                                   >  2:3051652/1‑100 (MQ=255)
                                                  ataAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATg                                                   <  2:1688780/100‑1 (MQ=255)
                                                  aaaaaaaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGaa                                                        <  2:959367/93‑1 (MQ=255)
                                                    aaaaaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGa                                                  <  2:3614791/99‑1 (MQ=255)
                                                     aaaaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTAGCCGGCCTACATGTCGCACGAACCATGAAg                                                <  2:3013085/100‑1 (MQ=255)
                                                       aaaGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGc                                              <  2:3879727/100‑1 (MQ=255)
                                                         aGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACACCTTATCCGGCCTACATGTCGCACGAACCATGAAGGccc                                            <  1:2924798/100‑1 (MQ=255)
                                                          gTGATTGCCAGCAATGGGGAAGATTAAGAGTAGCTAACACTGCCAGATGGTGAGAGAACGCCTTATCCGGCCTACATGACGCACGAACCATGACgg                                               >  2:2610639/1‑96 (MQ=255)
                                                           tGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGa                                          <  2:2955981/100‑1 (MQ=255)
                                                            gATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGAt                                         >  1:3273072/1‑100 (MQ=255)
                                                             aTTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATa                                        >  1:1412006/1‑100 (MQ=255)
                                                             aTTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATa                                        >  2:836974/1‑100 (MQ=255)
                                                             aTTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATa                                        >  1:2006555/1‑100 (MQ=255)
                                                              ttGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATaa                                       <  2:4005154/100‑1 (MQ=255)
                                                               tGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATa                                        <  2:3561477/98‑1 (MQ=255)
                                                               tGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAag                                      <  1:1477426/100‑1 (MQ=255)
                                                                gCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                     >  2:4058220/1‑100 (MQ=255)
                                                                gCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagc                                     >  2:3757047/1‑100 (MQ=255)
                                                                  cAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgc                                   <  1:22955/100‑1 (MQ=255)
                                                                    gTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgc                                   >  2:2352636/1‑98 (MQ=255)
                                                                      aaTGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagcg                               <  1:2966188/100‑1 (MQ=255)
                                                                      aaTGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagcg                               <  1:3161054/100‑1 (MQ=255)
                                                                      aaTGGGGAAGATTTAGAGTAGGTAACAATGCCAGATGCGGCGAGAACGCCTTATCAGGCCTACATGTCGCACGGACCAAGACGGCCCGATAagcgcagcg                               >  2:575030/1‑100 (MQ=37)
                                                                          gggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCGACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATc                           >  2:2637516/1‑100 (MQ=255)
                                                                           ggAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCg                          >  2:373462/1‑100 (MQ=255)
                                                                            gAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATAAGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCgg                         <  2:3467068/100‑1 (MQ=255)
                                                                              aGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCggg                        >  2:195393/1‑99 (MQ=255)
                                                                               gATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCa                      >  2:3683737/1‑100 (MQ=255)
                                                                                aTTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCaa                     >  1:72000/1‑100 (MQ=255)
                                                                                  ttAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAAtt                   <  2:1319763/100‑1 (MQ=255)
                                                                                     gagTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAg                <  2:1072842/100‑1 (MQ=255)
                                                                                     gagTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAg                <  2:1814960/100‑1 (MQ=255)
                                                                                       gTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCa              <  1:2766026/100‑1 (MQ=255)
                                                                                            tAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTgg         >  1:337560/1‑100 (MQ=255)
                                                                                             aaCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGc        <  2:1225904/100‑1 (MQ=255)
                                                                                               cAGTGCCGGATGAGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCAt      >  1:2727048/1‑100 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga  <  1:4115454‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CGCAGGCAACGGTACGCTGACGCGCACGCGTAAGAAATCATTCTGGTGGTATAAAAAAGTGATTGCCAGTAATGGGGAAGATTTAGAGTAGGTAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGA  >  NC_000913/2842324‑2842522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.