New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 354733NA (NA)11 (0.080) 8/164 NT NA noncoding (135/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 354765 NA (NA)noncoding (167/171 nt) REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 178 total aligned reads displayed.

GCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATA  >  NC_000913/354634‑354832
                                                                                                   |                                                                                                   
   gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcc                                                                                                  <  2:3257585‑M1/100‑4 (MQ=255)
   gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcc                                                                                                  <  1:923204‑M1/100‑4 (MQ=255)
    aTGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcct                                                                                                 <  1:3387664‑M1/100‑5 (MQ=255)
       ccTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcctgat                                                                                              <  1:3887621‑M1/100‑8 (MQ=255)
        cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcctgaag                                                                                             >  2:2803827‑M1/1‑92 (MQ=255)
          gATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCg                                                                                           >  1:1481650/1‑100 (MQ=255)
           aTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCACATCCGACACCATGCTCAGATGCCTGATGCGa                                                                                          <  2:303374/100‑1 (MQ=255)
            tGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc                                                                                         >  1:237518/1‑100 (MQ=255)
            tGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc                                                                                         <  1:281347/100‑1 (MQ=255)
            tGCGACGCTGACGCGTTTTATCATGCCTACGGACCGGCACCGTAGGGCGGATGAGGCGCGCGCGTCCCATCCAACGCTATATTCAGATGCATGATGCGAc                                                                                         >  2:2666221/1‑100 (MQ=21)
             gCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACg                                                                                        >  2:2387711/1‑100 (MQ=255)
             gCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACg                                                                                        >  1:562915/1‑100 (MQ=255)
             gCGACGCTGACGCGTTTTATCATGCCTACGGAACTGAACTGTTGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACg                                                                                        <  2:2899946/100‑1 (MQ=255)
              cGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGc                                                                                       >  2:1160112/1‑100 (MQ=255)
                     gACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg                                                                                <  2:1544229/100‑1 (MQ=255)
                     gACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgcg                                                                                >  2:3971864/1‑100 (MQ=255)
                       cgcgTTTTATCATGCCTACGGACCTGAACCGGAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTc                                                                              <  2:1825248/100‑1 (MQ=255)
                        gcgTTTTAGCAGGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACACCATGCGCAGATGCCTGATGCGACGCTGACGCGTCt                                                                             <  2:755003/100‑1 (MQ=25)
                          gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTA                                                                           >  1:3134080‑M2/1‑100 (MQ=255)
                          gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTA                                                                           >  1:3585362‑M2/1‑100 (MQ=255)
                          gTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTA                                                                           >  1:2452719‑M2/1‑100 (MQ=255)
                            tttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATC                                                                         >  2:1054864‑M2/1‑100 (MQ=255)
                            tttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATC                                                                         >  1:3739817‑M2/1‑100 (MQ=255)
                             ttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcctgataagacgcgtcagcgtcgcatca                                                                        <  2:712921‑M1/100‑30 (MQ=255)
                              tATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAG                                                                       >  1:3606579‑M2/1‑100 (MQ=255)
                              tATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAG                                                                       <  1:3685488‑M2/100‑1 (MQ=255)
                               aTCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGCCACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGG                                                                      <  2:2395614‑M2/100‑1 (MQ=255)
                               aTCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcctgataagacgcgtcagcgtcgcatcagg                                                                      <  1:3352389‑M1/100‑32 (MQ=255)
                               aTCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGG                                                                      <  1:2589713‑M2/100‑1 (MQ=255)
                               aTCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGG                                                                      <  2:1690233‑M2/100‑1 (MQ=255)
                                tCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGC                                                                     >  2:654251‑M2/1‑100 (MQ=255)
                                 cATGCCTACGGACCTGAACCGTAGGTGGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                                                    >  1:2517664/1‑100 (MQ=255)
                                 cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcctgataagacgcgtcagcgtcgcatcaggca                                                                    <  1:2885740‑M1/100‑34 (MQ=255)
                                 cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                                                    >  1:2366978/1‑100 (MQ=255)
                                 cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                                                    >  1:1054794/1‑100 (MQ=255)
                                   tGCCTGCGGGCGTGAACCGTAGGTCGGATAAGGGCCTCGCGTGGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                                                    <  2:3218917/98‑1 (MQ=25)
                                   tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCCGGCCTa                                                                  >  2:1894661/1‑100 (MQ=255)
                                   tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACACCATGCTCAGATgcctgataagacgcgtcagcgtcgcatcaggcatc                                                                  <  1:836496‑M1/100‑36 (MQ=255)
                                    gCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                                                                 <  1:4110796/100‑1 (MQ=255)
                                     ccTACGGACGTGAACGGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAcc                                                                <  2:3665830/100‑1 (MQ=255)
                                     ccTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATgcctgataagacgcgtcagcgtcgcatcaggcatctg                                                                <  1:91318‑M1/100‑38 (MQ=255)
                                     ccTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAcc                                                                >  1:757898/1‑100 (MQ=255)
                                      cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc                                                               <  1:151802/100‑1 (MQ=255)
                                      cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc                                                               >  2:1661604/1‑100 (MQ=255)
                                       tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCa                                                              <  2:2955267/100‑1 (MQ=255)
                                        aCGGACCTGAGCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGACgcttgataagacgcgtcagcgtcgcatcaggcatctg                                                                <  2:2204580‑M1/97‑38 (MQ=255)
                                        aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCAc                                                             <  2:722174/100‑1 (MQ=255)
                                        aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCAc                                                             <  2:3469731/100‑1 (MQ=255)
                                         cGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACt                                                            <  1:2666726/100‑1 (MQ=255)
                                           gACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGt                                                          >  2:4135429/1‑100 (MQ=255)
                                            aCCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt                                                         <  1:3317489/100‑1 (MQ=255)
                                            aCCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt                                                         <  1:1324977/100‑1 (MQ=255)
                                             ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGttt                                                        >  2:792969/1‑100 (MQ=255)
                                             ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGttt                                                        >  1:1147604/1‑100 (MQ=255)
                                             ccTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGttt                                                        <  1:2487152/100‑1 (MQ=255)
                                              cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtttt                                                       <  2:3144380/100‑1 (MQ=255)
                                                 aaCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTac                                                    <  1:2699668/100‑1 (MQ=255)
                                                  aCCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTac                                                    <  1:3443955/99‑1 (MQ=255)
                                                   ccGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                  >  1:2885962/1‑100 (MQ=255)
                                                        ggTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATa                                             >  1:2010323/1‑100 (MQ=255)
                                                           cGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAtt                                          >  2:2073225/1‑100 (MQ=255)
                                                            ggATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttt                                         >  1:2997759/1‑100 (MQ=255)
                                                              agaaGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttttt                                       >  1:2795689/3‑100 (MQ=255)
                                                              aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttttt                                       <  2:272456/100‑1 (MQ=255)
                                                                aaGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTcc                                     <  1:1817936/100‑1 (MQ=255)
                                                                 aGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTccc                                    <  2:51698/100‑1 (MQ=255)
                                                                 aGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTccc                                    <  1:481165/100‑1 (MQ=255)
                                                                 aGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTccc                                    <  1:2274793/100‑1 (MQ=255)
                                                                   gcgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTccccc                                  <  2:2676698/100‑1 (MQ=255)
                                                                    cgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCa                                 >  1:2090220/1‑100 (MQ=255)
                                                                    cgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCa                                 <  2:3450812/100‑1 (MQ=255)
                                                                      atggtgTCGGATGCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCAcc                               >  1:3946238/6‑100 (MQ=37)
                                                                          cgTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCtttt                           <  1:2639495/100‑1 (MQ=255)
                                                                           gTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTCCCCACTGTTTTTACACCGATAATTTTTCCCCCACCttttt                          >  1:3061993/1‑100 (MQ=255)
                                                                           gTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCtttt                           <  2:2577364/99‑1 (MQ=255)
                                                                             cGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTATCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGc                        <  2:2260289/100‑1 (MQ=255)
                                                                             cGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGc                        <  2:1748174/100‑1 (MQ=255)
                                                                             cGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGc                        <  1:1595071/100‑1 (MQ=255)
                                                                             cGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGc                        <  1:1665804/100‑1 (MQ=255)
                                                                              gCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCa                       >  2:2067075/1‑100 (MQ=255)
                                                                                  ccGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTCACACCGATAATTTTTCCCCCACCTTTTTGCACtc                    <  2:455930/99‑1 (MQ=255)
                                                                                      tacCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcattca               <  1:8582/99‑1 (MQ=255)
                                                                                      cacCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcattta               <  1:2789943/100‑3 (MQ=255)
                                                                                      cacCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcattca               <  2:3996994/100‑1 (MQ=255)
                                                                                       acCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcattcat              <  1:2050109/100‑1 (MQ=255)
                                                                                       acCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcattcaa              >  2:8582/1‑99 (MQ=255)
                                                                                        ccATGCTCAGATGCCTGCTGCGACGCCGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTGTTCCCCCACCTTTTTGCACTCATTCata             <  2:369836/100‑1 (MQ=255)
                                                                                        ccATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCata             >  1:1020974/1‑100 (MQ=255)
                                                                                        ccATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCata             >  1:581877/1‑100 (MQ=255)
                                                                                           tGCTCAGATGCCTGATGCGACTCTGATGCGTCTTAGCACGCCTACCCACTGTTTTTTCACCGATACTTTTTCCCCCACCTTTTTGCACtcattca               <  2:3885343/95‑1 (MQ=38)
                                                                                           tGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATaa          >  2:2764897/1‑100 (MQ=255)
                                                                                             cTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATaaaa        >  2:2445738/1‑100 (MQ=255)
                                                                                                aGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCatctgagcatggtgtcggatgcgacgcgagcgccttatccgacctacggttcaggtccgtaggc     <  1:681854‑M2/100‑65 (MQ=255)
                                                                                                aGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAat     <  2:2373120/100‑1 (MQ=255)
                                                                                                 gATGCCTGATGCGACGCTGACGCGTCTTATCAGGCatctgagcatggtgtcggatgcgacgcgagcgccttatccgacctacggttcaggtccgtaggca    <  2:1895155‑M2/100‑66 (MQ=255)
                                                                                                 gATGCCTGATGCGACGCTGACGCGTCTTATCAGGCatctgagcatggtgtcggatgcgacgcgagcgccttatccgacctacggttcaggtccgtaggc     <  1:3368298‑M2/99‑65 (MQ=255)
                                                                                                  aTGCCTGATGCGACGCTGACGCGTCTTATCAGGCatctgagcatggtgtcggatgcgacgcgagcgccttatccgacctacggttcaggtccgtaggcat   <  2:3289546‑M2/100‑67 (MQ=255)
                                                                                                  aTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatat   <  1:3353870/100‑1 (MQ=255)
                                                                                                   tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATCATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAata    >  2:1439414/1‑98 (MQ=255)
                                                                                                   tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatata  <  1:3971890/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATA  >  NC_000913/354634‑354832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.