New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 377335 =NA (NA)22 (0.160) 6/164 NT NA noncoding (1/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 377368 = NA (NA)noncoding (34/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 247 total aligned reads displayed.

CGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAT  >  NC_000913/377236‑377434
                                                                                                   |                                                                                                   
cgcgcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATg                                                                                                     <  2:1360888/100‑1 (MQ=255)
cgcgcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGGCGTGCGCAGATg                                                                                                     <  2:3883218/100‑1 (MQ=255)
cctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagg                                                                                                     >  1:2600272‑M1/100‑100 (MQ=255)
  tgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGcc                                                                                                   >  1:124959‑M1/98‑100 (MQ=255)
  tgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGcc                                                                                                   <  2:2994451‑M1/3‑1 (MQ=255)
  cgcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGcc                                                                                                   >  2:930362/1‑100 (MQ=255)
   gcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCt                                                                                                  >  1:3065366/1‑100 (MQ=255)
   gcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCt                                                                                                  <  2:1354201/100‑1 (MQ=255)
   gcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCt                                                                                                  >  2:3854707/1‑100 (MQ=255)
    cTCAGCGCCGAAGAGCAGGATGAAGACGACCTGTATGCCGACTTCAAAGTGCCTGAGGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTg                                                                                                 <  2:2791152/100‑1 (MQ=255)
     taagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgaacataaaccgtagGCCTGa                                                                                                <  2:1089401‑M1/6‑1 (MQ=255)
     taagacgcgcaaagcgtagcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGa                                                                                                <  2:438252‑M1/6‑1 (MQ=255)
      cAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGAt                                                                                               >  2:921179/1‑100 (MQ=255)
      aagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGAt                                                                                               >  1:3385449‑M1/94‑100 (MQ=255)
      aagacgcgcaaagcgtcgcatcaggcatagcgcgcgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGAt                                                                                               >  2:1776989‑M1/94‑100 (MQ=255)
       aGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATg                                                                                              <  1:2064529/100‑1 (MQ=255)
        gcgcCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGc                                                                                             >  2:3888379/1‑100 (MQ=255)
          gcCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGa                                                                                           >  2:1554749/1‑100 (MQ=255)
          gcCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGa                                                                                           >  1:697032/1‑100 (MQ=255)
            cGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACg                                                                                         >  2:561498/1‑100 (MQ=255)
             gAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAATGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGc                                                                                        <  2:2241218/100‑1 (MQ=255)
             gAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGc                                                                                        >  1:727830/1‑100 (MQ=255)
               agagCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa                                                                                      <  2:2662808/100‑1 (MQ=255)
                  gCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc                                                                                   >  1:2273920/1‑100 (MQ=255)
                    aGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc                                                                                 >  1:2529641/1‑100 (MQ=255)
                     ggATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg                                                                                <  1:1091700/100‑1 (MQ=255)
                      gATGAAGACGACCCGTATGCCGACTTCAAAGTGTCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt                                                                               >  2:2733989/1‑100 (MQ=255)
                      gATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt                                                                               >  2:3104824/1‑100 (MQ=255)
                        tGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGGCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt                                                                             >  1:2901160/1‑100 (MQ=255)
                         gAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt                                                                            >  1:811619/1‑100 (MQ=255)
                         gAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt                                                                            >  1:3933458/1‑100 (MQ=255)
                          aaGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCttn                                                                           <  1:1408286/100‑2 (MQ=255)
                           aGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt                                                                          >  2:751400/1‑100 (MQ=255)
                               catggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAgg                                                                      >  2:2065790‑M1/69‑100 (MQ=255)
                                atggcgcacgactgccggatgcggcgtgaacgccttatccggtctacccttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                     >  2:1305809‑M1/68‑100 (MQ=255)
                                atggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                     >  1:3970344‑M1/68‑100 (MQ=255)
                                atggcgcacgactgccggatgcggcgtgaacgccttatccggtcgacgcttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                     >  2:808759‑M1/68‑100 (MQ=255)
                                acCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                     <  2:3426793/100‑1 (MQ=255)
                                 tggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                    >  1:950870‑M1/67‑100 (MQ=255)
                                 tggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                    >  1:1661230‑M1/67‑100 (MQ=255)
                                 tggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                    >  1:3159587‑M1/67‑100 (MQ=255)
                                 tggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                    >  2:2916625‑M1/67‑100 (MQ=255)
                                 cccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg                                                                      <  2:3771905/98‑1 (MQ=255)
                                 cccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                    <  1:2432968/100‑1 (MQ=255)
                                 aatagcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtagGCCTGATGCGACGCTTTGCGCGTCTTATCAGGcc                                                                    >  1:617599‑M1/67‑100 (MQ=255)
                                    gTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                 >  2:2137738/1‑100 (MQ=255)
                                    agcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtagGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTAc                                                                 >  1:365983‑M1/64‑100 (MQ=255)
                                        gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                             <  1:1545689/100‑1 (MQ=255)
                                        cgactgccggatgcggtgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                             >  1:954664‑M1/60‑100 (MQ=255)
                                         ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                            <  2:2273907/100‑1 (MQ=255)
                                            aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                         <  2:1690096/100‑1 (MQ=255)
                                             cTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTa                                                           >  2:3709731/1‑97 (MQ=255)
                                             cTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATgg                                                        <  2:2443385/100‑1 (MQ=255)
                                              ttCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                       <  2:1068067/100‑1 (MQ=255)
                                               tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCTTGCGCAGATGCCTGATGTGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                      <  1:2836593/100‑1 (MQ=255)
                                               tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                       <  2:1200363/99‑1 (MQ=255)
                                               tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                      >  2:415301/1‑100 (MQ=255)
                                               tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                      >  2:3494529/1‑100 (MQ=255)
                                               tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                      >  2:469152/1‑100 (MQ=255)
                                                 aaaGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGa                                                    >  1:2749491/1‑100 (MQ=255)
                                                     tGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtg                                                >  1:4091084/1‑100 (MQ=255)
                                                        cTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                             >  1:30104/1‑100 (MQ=255)
                                                         tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGa                                            >  1:843214/1‑100 (MQ=255)
                                                         tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGa                                            <  1:3577083/100‑1 (MQ=255)
                                                          gatgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGAc                                           >  2:1722833/1‑100 (MQ=255)
                                                          gatgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGAc                                           <  1:484153/100‑1 (MQ=255)
                                                            tgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                         <  1:569496/100‑1 (MQ=255)
                                                              atTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGa                                       <  2:3337163/100‑1 (MQ=255)
                                                                ttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATa                                     <  2:4091057/100‑1 (MQ=255)
                                                                 tGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATa                                     <  1:1520386/99‑1 (MQ=255)
                                                                  gATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAg                                   >  1:1640352/1‑100 (MQ=255)
                                                                   aTGTGGTAAACATAGATAAGTCGTGCGCAGATGCCCGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAgg                                  <  2:3362804/100‑1 (MQ=255)
                                                                    tgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGc                                 >  1:4136822/1‑100 (MQ=255)
                                                                     gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                                >  1:910058/1‑100 (MQ=255)
                                                                     gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGATTATGGGCGAAGTGTAGACCGGATAAGGCg                                >  1:1873776/1‑100 (MQ=255)
                                                                      tgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGAtgcggcgt                               >  1:511183/1‑93 (MQ=255)
                                                                      tgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGt                               <  2:3252120/100‑1 (MQ=255)
                                                                      tgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGt                               >  2:1939986/1‑100 (MQ=255)
                                                                       ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                              >  2:2082883/1‑100 (MQ=255)
                                                                        gTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTc                             <  1:1062106/100‑1 (MQ=255)
                                                                             cATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGGCCGGATAAGGCGTTCAcgcc                        <  1:1920187/100‑1 (MQ=255)
                                                                             cATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgcc                        >  2:2351925/1‑100 (MQ=255)
                                                                             cATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgcc                        <  1:3888404/100‑1 (MQ=255)
                                                                                aGATAAGTCTTGCGCATATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccgc                      <  1:2405136/99‑1 (MQ=255)
                                                                                 gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCAt                    >  2:4033818/1‑100 (MQ=255)
                                                                                   tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATGCGGCGTGAAcgccttatcc                  <  1:3504314/100‑7 (MQ=18)
                                                                                   tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATcc                  >  1:672461/1‑100 (MQ=255)
                                                                                     aGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                >  2:2706778/1‑100 (MQ=255)
                                                                                     aGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                >  2:1528932/1‑100 (MQ=255)
                                                                                      gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc               >  1:2726562/1‑100 (MQ=255)
                                                                                      gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc               >  1:3286745/1‑100 (MQ=255)
                                                                                      gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc               >  1:2169317/1‑100 (MQ=255)
                                                                                         gTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt            <  1:1235753/100‑1 (MQ=255)
                                                                                         gTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt            <  1:1167969/100‑1 (MQ=255)
                                                                                          tGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTc           <  1:1351489/100‑1 (MQ=255)
                                                                                           gcgcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCg          <  1:3745533/100‑1 (MQ=255)
                                                                                              cAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc       <  1:1463660/100‑1 (MQ=255)
                                                                                               aGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgcg      <  1:3343511/100‑1 (MQ=255)
                                                                                                gATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgcgc     >  1:3738173/1‑100 (MQ=255)
                                                                                                  tGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa   >  1:1473051/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAT  >  NC_000913/377236‑377434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.