New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1432763 =	NA (NA)	9 (0.060)	5/168	NT	NA	coding (353/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	1432785 =	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

GGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCT  >  NC_000913/1432692‑1432850                                                                        |                                                                                        gaaataTGTTACGTGGTTATCGCAGGATTGGGAGTTTCAGAAGTGGAACGGCACAGCTTGTGTGATGGATAAGGTAGCAGAAGAACTGTTc                                                                      >  2:249720/6‑91 (MQ=0)                                                      caaccTGGGTGAAGGATACGGAAGAAGAAAAACTGTTCCGGATCCGGGAGACCGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTgc        <  2:2496408/97‑1 (MQ=1)                                                            gtgttaaGAATACGGAATCAGAAAATCTGCTCCGGATCCAGGATGCGGAAGAAACAAAAAACAACCTGATTCAGGTAGCCAGTGAGCATATTCCGCCGCt  <  2:3287546/95‑1 (MQ=1)                                                                        |                                                                                        GGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCT  >  NC_000913/1432692‑1432850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.