New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3216644NA (NA)9 (0.070) 6/164 NT NA noncoding (44/78 nt) REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3216674 NA (NA)noncoding (74/78 nt) REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 236 total aligned reads displayed.

CGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGG  >  NC_000913/3216575‑3216773
                                                                                                   |                                                                                                   
 gATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                    >  1:3462239/1‑100 (MQ=255)
 gATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                    <  1:753338/100‑1 (MQ=255)
 gATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                    <  2:1187912/100‑1 (MQ=255)
    ttGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                                                 >  2:3795858/1‑100 (MQ=255)
      gTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgt                                                                                               >  2:1315033/1‑100 (MQ=255)
       tAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgtg                                                                                              >  2:830085/1‑100 (MQ=255)
         gAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGtgtg                                                                                            >  1:230233/1‑100 (MQ=255)
         gAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGtgtg                                                                                            <  1:1728085/100‑1 (MQ=255)
         gAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCGCAGGCATCATTACTCAACGCCGGATGCGCCGTGAACGCCTTATCCGGCCTACGtgtg                                                                                            <  2:1156337/100‑1 (MQ=255)
          aaCTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTga                                                                                           <  1:3315569/100‑1 (MQ=255)
          aaCTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTga                                                                                           <  1:1802456/100‑1 (MQ=255)
            cTGATATGTCTATAGTCTGATAAGACGAACCGCCTATTCTCCGCCATCATTACTCAACGCCGAATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                                                 >  2:2977053/1‑92 (MQ=37)
              gATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATg                                                                                       >  1:763496/1‑100 (MQ=255)
                  tGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTc                                                                                   >  2:3931611/1‑100 (MQ=255)
                  tGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTc                                                                                   >  2:1537684/1‑100 (MQ=255)
                   gTCTATAGTCTGATAAGCCGAACCGCCTCTTCTCAGGCATCATTACTCAAAGCCGGATGCGGCGTCAACGCCCTCTCCGGCCTACGTGTgacaagcgacc                                                                                  <  2:2409405/100‑10 (MQ=255)
                     cTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCAc                                                                                >  1:1929948/1‑100 (MQ=255)
                      tataGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACg                                                                               >  1:1034447/1‑100 (MQ=255)
                        taGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGtt                                                                             <  1:599669/100‑1 (MQ=255)
                        taGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGtt                                                                             >  1:3972152/1‑100 (MQ=255)
                        taGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGGGAGATGAGTCCAc                                                                                >  1:485571/1‑97 (MQ=255)
                          gTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGACAGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTa                                                                           >  2:3390980/1‑100 (MQ=255)
                          gTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTa                                                                           >  2:1387836/1‑100 (MQ=255)
                          gTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTa                                                                           >  1:2412095/1‑100 (MQ=255)
                            cTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGGCCACGTGTaaa                                                                         >  1:1635774/1‑100 (MQ=255)
                            cTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGACGGACGCGGCGTTAACCCCTTATCCGGCgctgcggaatgatgcctgaga                                                                                <  2:2225922‑M2/93‑22 (MQ=255)
                             tGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaaa                                                                        >  2:4016795/1‑100 (MQ=255)
                             tGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaaa                                                                        <  1:2704764/100‑1 (MQ=255)
                             tGATAAGACGAACCGACTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTACAAGATTaaaa                                                                        <  2:640607/100‑1 (MQ=37)
                              gATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaaaa                                                                       <  1:3888292/100‑1 (MQ=255)
                              gATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTaaaaa                                                                       <  1:1105720/100‑1 (MQ=255)
                               aTAAGATGAACCGCCTCTCCTCAGTCATCATTACTCCGCGCCGGATGCGGCGTGCATGTCTTATCCGGCCTACGTGTGAGATGCGTCCACGTTTAAAAAt                                                                      <  2:5957/100‑1 (MQ=37)
                               aTAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAAt                                                                      >  1:1083614/1‑100 (MQ=255)
                                tAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATc                                                                     <  2:1676502/100‑1 (MQ=255)
                                  aGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAt                                                                   >  2:2597691/1‑100 (MQ=255)
                                   gACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAtt                                                                  >  2:1600465/1‑100 (MQ=255)
                                    aCGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttt                                                                 <  2:3778566/100‑1 (MQ=255)
                                     cGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAtttt                                                                <  1:2139675/100‑1 (MQ=255)
                                     cGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAtttt                                                                >  1:1291864/1‑100 (MQ=255)
                                      gAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttttt                                                               <  2:67371/100‑1 (MQ=255)
                                      gAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCAttttt                                                               <  2:2085384/100‑1 (MQ=255)
                                        aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTac                                                             <  1:1680903/100‑1 (MQ=255)
                                        aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTac                                                             <  1:257941/100‑1 (MQ=255)
                                        aCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTac                                                             <  1:3496875/100‑1 (MQ=255)
                                           gCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACt                                                          >  1:809673/1‑100 (MQ=255)
                                           gCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACt                                                          >  1:3015399/1‑100 (MQ=255)
                                             ctctTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTg                                                        >  2:3889931/1‑100 (MQ=255)
                                             ctctTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTg                                                        >  2:481661/1‑100 (MQ=255)
                                               cttctCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCa                                                      <  2:2734714/100‑1 (MQ=255)
                                                ttctCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCaa                                                     <  2:4055823/100‑1 (MQ=255)
                                                 tctcAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAg                                                    >  1:2968962/1‑100 (MQ=255)
                                                 tctcAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAg                                                    <  1:1475719/100‑1 (MQ=255)
                                                  ctcAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGa                                                   >  1:2446383/1‑100 (MQ=255)
                                                   tcAGGCATCATGACTCAACGCGGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGaa                                                  <  2:1222190/100‑1 (MQ=255)
                                                    cAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAAc                                                 >  1:1924348/1‑100 (MQ=255)
                                                    cAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAAc                                                 <  1:3311788/100‑1 (MQ=255)
                                                      ggCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGc                                               >  2:2359219/1‑100 (MQ=255)
                                                       gCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTGCACGTTTAAAAATCATTTTGACACTTGCACGATCGCt                                              <  2:929641/100‑1 (MQ=37)
                                                        catcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTc                                             <  2:225439/100‑1 (MQ=255)
                                                        catcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTc                                             >  1:3473909/1‑100 (MQ=255)
                                                        catcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTc                                             <  1:3817986/100‑1 (MQ=255)
                                                         atcatTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCa                                            <  2:253889/100‑1 (MQ=255)
                                                           catTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCa                                            <  1:2642846/98‑1 (MQ=255)
                                                            atTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCatat                                         >  2:1891741/1‑100 (MQ=255)
                                                             ttACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATc                                        <  2:3055791/100‑1 (MQ=255)
                                                             cttccgatctccGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATc                                        <  2:346384/90‑1 (MQ=255)
                                                               aCTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAg                                      >  1:3910547/1‑100 (MQ=255)
                                                               aCTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAg                                      <  2:583453/100‑1 (MQ=255)
                                                                gatctcgccggATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctac                                     >  1:2357749‑M2/6‑36 (MQ=255)
                                                                cgcAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGa                                     >  1:2798054/3‑100 (MQ=255)
                                                                 tCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGat                                    <  2:145364/100‑1 (MQ=255)
                                                                  cAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGata                                   >  2:281321/1‑100 (MQ=255)
                                                                   aaCGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaa                                  <  1:1518092‑M2/100‑68 (MQ=255)
                                                                   aaCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGatat                                  <  2:809667/100‑1 (MQ=255)
                                                                    gcGCCGGATGCGGCGTGAACGCCTTATCGGGCCTACGTGTGAGGTGTGGCGACGTTTAAAACTCATTTTTATACTTGCAAGAACGCTCATATCAGata                                   >  2:1759331/2‑98 (MQ=25)
                                                                    aCGCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaat                                 <  2:1912693‑M2/100‑69 (MQ=255)
                                                                    aCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGAtata                                 >  1:19821/1‑100 (MQ=255)
                                                                      gCCGGATGCGGCGTGAACGCCTTATCCGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaatcg                               <  1:1446225‑M2/100‑71 (MQ=255)
                                                                        cGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAAtt                             <  1:2822037/100‑1 (MQ=255)
                                                                            tGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGat                         <  1:3351021/100‑1 (MQ=255)
                                                                              cggcgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGatat                       >  1:1173806/1‑100 (MQ=255)
                                                                              cggcgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGatat                       >  2:1478868/1‑100 (MQ=255)
                                                                               ggcgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGatata                      <  1:1389993/100‑1 (MQ=255)
                                                                                 cgTGAACTCCTTATCCTGCCTACGGGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATc                    <  1:2829269/100‑1 (MQ=255)
                                                                                      aCGGCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCTTTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAAtt               <  2:3210404/100‑1 (MQ=255)
                                                                                      aCGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGTAAGAACGCTCATATCAGATATAAATTAGATATATCTAAtt               >  1:441624/1‑100 (MQ=255)
                                                                                       cGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTa              >  1:319448/1‑100 (MQ=255)
                                                                                       cGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTa              >  2:3653643/1‑100 (MQ=255)
                                                                                        gCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTaa             >  1:941537/1‑100 (MQ=255)
                                                                                        gCCTTACCCGGCCTACGTATCAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGACCGCTCATATCAGATATAAATTAGATATATCTAAtt               <  2:3162839/98‑1 (MQ=255)
                                                                                         ccTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAg            >  2:354183/1‑100 (MQ=255)
                                                                                         ccTTATCCGGCCTAAGTGTGATGCGAGTCAACGCTTAAAAATCATTTTTACACTTGCAAGTAAGCTCATATAACATATATATTAGATATATATATTTaa             >  2:989212/1‑99 (MQ=255)
                                                                                          cTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGc           <  2:287146/100‑1 (MQ=255)
                                                                                               ccGGCgttgagtaatgatgcctgcgaagaggcggttcgtcttatcagactatagacatatcagttctacaaatcgcatgcatttatcctgcttaacaatc      >  2:2679731‑M2/1‑5 (MQ=255)
                                                                                               ccGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaatcgcttgcatttatcatgattaacaatc      >  1:3691591‑M2/1‑5 (MQ=255)
                                                                                                cGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaatcgcttgcatttatcatgattaacaatca     <  2:1618779‑M2/100‑97 (MQ=255)
                                                                                                cGGCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaatcgcttgcatttatcatgattaacaatca     >  2:2880453‑M2/1‑4 (MQ=255)
                                                                                                 ggCgttgagtaatgatgcctgagaagaggctgttcgtcttatcagactatagacatatcagttctacaaatcgcttgcatttatcatgattaacaatca     >  2:181689‑M2/1‑3 (MQ=255)
                                                                                                 ggCgttgagtaatgatgcctgagaagaggcggttcgtcttatcagactatagacatatcagttctacaaatcgcttgcatttatcatgattaacaatcat    <  1:1313898‑M2/100‑98 (MQ=255)
                                                                                                   cgttgagtaatgatgcctgagaagaggtggttcatcttatcagactatagacatatcagttctacaaatcgcttgcatttatcatgattaacaatcatta  <  2:2473032‑M2/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGG  >  NC_000913/3216575‑3216773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.