BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4008401 =	NA (NA)	12 (0.090)	8/164	NT	NA	noncoding (5/34 nt)	REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	4008431 =	NA (NA)	12 (0.090)	8/164	NT	NA	intergenic (+54/+8)	rhtC/rhtB	threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump

Only 100 of 246 total aligned reads displayed.

GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCTT  >  NC_000913/4008332‑4008530

gggtgtttgtGCTGGGTTTGGCTTTGATTTGATTAGTGCGCGGTGATGCCAGACGCTGCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACa                                                                                                     <  2:383267/91‑1 (MQ=21)

 gCGTTATTTGCCGGAGTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACat                                                                                                    <  1:4063614/100‑1 (MQ=255)

   tttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                                                  >  2:1462480‑M1/67‑100 (MQ=255)

   tttcggctcgttgtttatgcgggtgggcacgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGCTTACGCCGCATCCGACatt                                                                                                   >  2:820157‑M1/67‑99 (MQ=255)

   gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                                                  >  1:1044065/1‑100 (MQ=255)

    ttATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACattat                                                                                                 <  1:391525/100‑1 (MQ=255)

     tATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACattatt                                                                                                >  2:2837354/1‑100 (MQ=255)

     tATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACattatt                                                                                                >  1:954327/1‑100 (MQ=255)

     tATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACattatt                                                                                                <  1:743321/100‑1 (MQ=255)

      aTTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttt                                                                                               >  1:2484975/1‑100 (MQ=255)

      aTTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttt                                                                                               >  1:3693868/1‑100 (MQ=255)

       tttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAtttt                                                                                              <  2:116560/100‑1 (MQ=255)

        ttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttttt                                                                                             >  1:1223533/1‑100 (MQ=255)

        ttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAtttt                                                                                              <  2:658451/99‑1 (MQ=255)

        gctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttttt                                                                                             >  1:2644787‑M1/62‑100 (MQ=255)

         tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                                                            <  1:680634/100‑1 (MQ=255)

          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  2:2730058/1‑100 (MQ=255)

          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  1:3985833/1‑100 (MQ=255)

          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  1:1504655/1‑100 (MQ=255)

          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  1:3434084/1‑100 (MQ=255)

          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  2:2051398/1‑100 (MQ=255)

          gCCGGATTTGGCATTCATTTGATTATTGCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           <  2:3871863/100‑1 (MQ=255)

           ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                                                          <  2:2987046/100‑1 (MQ=255)

            cGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACg                                                                                         >  1:574366/1‑100 (MQ=255)

               aTTTGGCATTCATTTGATTATTTCGCGGTTATGCCAGGCGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCTCATCCGACATTATTTTTCACGCAt                                                                                      >  2:343216/1‑100 (MQ=255)

                tttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATg                                                                                     >  2:2319778/1‑100 (MQ=255)

                 ttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGc                                                                                    <  1:1804936/100‑1 (MQ=255)

                  tGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGcc                                                                                   >  2:1227291/1‑100 (MQ=255)

                  tGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCCTCTTCAGAGTAAGTCGGCTAAGGCGTTTCCGCCGCATCCGACATTATTCTTCACGCATg                                                                                     >  2:1424287/1‑98 (MQ=39)

                    gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCt                                                                                  >  1:434662/1‑99 (MQ=255)

                      attcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGc                                                                               >  1:2269201/1‑100 (MQ=255)

                       ttcattTGATTATTTCGCGGTGATGCCTGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                                              <  2:3767411/100‑1 (MQ=255)

                       ttcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                                              <  1:1111772/100‑1 (MQ=255)

                        tcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCg                                                                             <  1:3268560/100‑1 (MQ=255)

                          attTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGAt                                                                           <  1:799011/100‑1 (MQ=255)

                          attTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGAt                                                                           <  2:526345/100‑1 (MQ=255)

                          attTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGAt                                                                           >  2:1994632/1‑100 (MQ=255)

                          attTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGAt                                                                           <  2:3291237/100‑1 (MQ=255)

                           tttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATg                                                                          >  1:3795153/1‑100 (MQ=255)

                            ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                                                         <  2:1901346/100‑1 (MQ=255)

                            ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                                                         <  1:3469438/100‑1 (MQ=255)

                              gATTATGTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                                                         <  2:2697128/98‑1 (MQ=255)

                               nttattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTaa                                                                      >  1:1869537/2‑100 (MQ=255)

                                ttattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAAc                                                                     <  1:1339587/100‑1 (MQ=255)

                                        cgGTGATGCCAGAAGCGTCTTCAGATTACGTCGGATAAGTCGTTTACGCCTCATCCGACATTATTTTGCACGCATGCCTCGCCGATg                                                                          <  2:1055556/87‑1 (MQ=255)

                                          gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                                                           <  1:3544086/100‑1 (MQ=255)

                                            gATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacc                                                         <  2:1922368/100‑1 (MQ=255)

                                              tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAAGAGCGCTCCCACCAg                                                       >  2:2816134/1‑100 (MQ=255)

                                              tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccac                                                          >  2:1704104/1‑97 (MQ=255)

                                              tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                                                       <  1:2772634/100‑1 (MQ=255)

                                               gCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGc                                                      >  1:505986/1‑100 (MQ=255)

                                                ccAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCa                                                     <  2:1504643/100‑1 (MQ=255)

                                                ccAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCa                                                     >  2:1528112/1‑100 (MQ=255)

                                                      gcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaaca                                               <  2:758121/100‑1 (MQ=255)

                                                         tCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg                                            >  1:2094347/1‑100 (MQ=255)

                                                         tCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg                                            <  2:2765859/100‑1 (MQ=255)

                                                         gtgaaaaataatgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg                                            >  1:112959‑M2/43‑100 (MQ=255)

                                                          cTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGa                                           >  2:3787259/1‑100 (MQ=255)

                                                          cTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGa                                           >  2:2445127/1‑100 (MQ=255)

                                                          cTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGa                                           >  1:2137334/1‑100 (MQ=255)

                                                            tCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGc                                         <  2:3036349/100‑1 (MQ=255)

                                                             cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc                                        >  2:2158783/1‑100 (MQ=255)

                                                             cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc                                        <  2:899983/100‑1 (MQ=255)

                                                             cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc                                        >  1:1397119/1‑100 (MQ=255)

                                                             cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc                                        <  1:1866177/100‑1 (MQ=255)

                                                               gagTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa                                      >  1:877348/1‑100 (MQ=255)

                                                               gagTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa                                      >  2:4024542/1‑100 (MQ=255)

                                                                ataatgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaa                                     >  1:1585784‑M2/36‑100 (MQ=255)

                                                                 gTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaaa                                    <  2:3118631/100‑1 (MQ=255)

                                                                 gTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaaa                                    >  2:3587515/1‑100 (MQ=255)

                                                                  aatgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaaaa                                   >  1:3487406‑M2/34‑100 (MQ=255)

                                                                  aatgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaaa                                    >  2:2334270‑M2/34‑99 (MQ=255)

                                                                   ctgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGGCGAAAAt                                  <  1:2164235‑M2/68‑1 (MQ=255)

                                                                   atgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt                                  >  2:359282‑M2/33‑100 (MQ=255)

                                                                     GTCGGATGCGGCGTAAACGCCTTATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt                                <  1:2645600‑M1/100‑1 (MQ=255)

                                                                     GTCGGATAAGGCGTTTACGCCGCATCCGACCTTATTTTTTACGCATGCCTCGCCGATGCTAACAGCGCTCTCACCAGCATAAACAACGAGCCGaa                                     <  2:3585799‑M1/95‑1 (MQ=255)

                                                                       CGGGTAAGGCGTTTACGCCGCATCCGACATTATTTTTCCCGCGTGCCTCGCCGATACTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAaaatgtt                               <  2:2547321‑M1/99‑4 (MQ=255)

                                                                        ggATAAGGCGTTTACGCCGCATCCGACATTATTTTTTTTTTTTTTTTCACCGATGCTAACCGCGCTCCCACCATCATAAACACCGAGCCGAAAATCttct                             >  2:472073/1‑98 (MQ=19)

                                                                        GGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAt                             >  1:2730074‑M1/1‑100 (MQ=255)

                                                                        GGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAt                             >  1:660857‑M1/1‑100 (MQ=255)

                                                                           tgaGGCGTGTACGCCGTGTCCGACATTATATCACACGCATTCCTCGCAGATTCTAACAGCAATTCCACCCGCATAAACAACTAGCCGAAAATCTTATTc                           <  2:3511107/97‑1 (MQ=255)

                                                                           TAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCa                          <  1:4023133‑M1/100‑1 (MQ=255)

                                                                              ggCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAgcg                       >  2:3658413/1‑100 (MQ=255)

                                                                                cGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGcc                     <  2:4092087/100‑1 (MQ=255)

                                                                                 gTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCt                    <  2:851866/100‑1 (MQ=255)

                                                                                 gTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCt                    >  1:2460728/1‑100 (MQ=255)

                                                                                   ttACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTc                  <  2:3379500/100‑1 (MQ=255)

                                                                                    tACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCa                 >  2:1668301/1‑100 (MQ=255)

                                                                                     aCGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCt                    <  2:976691/96‑1 (MQ=255)

                                                                                      cgccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGACAATCTTATTCAGCGCCTTCATc               <  2:3973055/100‑1 (MQ=255)

                                                                                      cgccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATc               >  1:3344416/1‑100 (MQ=255)

                                                                                      cgccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATc               >  1:197397/1‑100 (MQ=255)

                                                                                       gccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCt              >  1:1033005/1‑100 (MQ=255)

                                                                                        ccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTg             >  1:3590956/1‑100 (MQ=255)

                                                                                         cgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGc            <  1:2312373/100‑1 (MQ=255)

                                                                                            atccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCttt         <  1:1004108‑M2/93‑1 (MQ=255)

                                                                                               cgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGt      >  2:2797291‑M2/5‑100 (MQ=255)

                                                                                               cgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGt      >  1:4055927‑M2/5‑100 (MQ=255)

                                                                                                 acATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTcc    <  1:2949897‑M2/98‑1 (MQ=255)

                                                                                                   attattTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCtt  <  1:1721126/100‑1 (MQ=255)

GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCTT  >  NC_000913/4008332‑4008530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.