New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4344813 =NA (NA)16 (0.120) 8/160 NT NA intergenic (+23/+116) melB/yjdF melibiose:sodium symporter/DUF2238 family inner membrane protein
?NC_000913 4344842 = NA (NA)noncoding (28/95 nt) RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 202 total aligned reads displayed.

GTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATC  >  NC_000913/4344743‑4344941
                                                                                                   |                                                                                                   
atgccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAGGCCAc                                                                                                     >  1:2685283‑M1/71‑100 (MQ=255)
 tgccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattatgacgTGGCCTGATGCGATATGTTTATCAGGCCACg                                                                                                    >  1:1197997‑M1/70‑100 (MQ=255)
  tCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGt                                                                                                   >  1:327919/1‑100 (MQ=255)
  gccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAGGCCACg                                                                                                    >  1:641982‑M1/69‑99 (MQ=255)
   ccggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAGGCCACGTc                                                                                                  >  1:1904384‑M1/68‑100 (MQ=255)
   cATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTc                                                                                                  <  1:835578/100‑1 (MQ=255)
    cggatgcggcgtgaattccttatccggtctacaaaatttgcaaatccaaagcattacattaagacgTGGCCTGATGCGATATGTTTATCAGGCCACGTCt                                                                                                 >  1:2959705‑M1/67‑100 (MQ=255)
     tGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCtt                                                                                                >  2:93245/1‑100 (MQ=255)
      gCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTta                                                                                               >  1:3264609/1‑100 (MQ=255)
         gATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaatg                                                                                            <  1:910167/100‑1 (MQ=255)
         gATATTCCGGTCGGTACAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaatg                                                                                            <  2:2732126/100‑1 (MQ=255)
          atatTCCGGTCGGTGCAGTGAGTGATGTGAAAGCTTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaatgt                                                                                           <  2:1536952/100‑1 (MQ=255)
          atatTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaatgt                                                                                           <  2:4033989/100‑1 (MQ=255)
              tCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTtaatgtaatg                                                                                       <  2:2671090/100‑1 (MQ=255)
                 ggtcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCtt                                                                                    >  1:3429121/1‑100 (MQ=255)
                  gtcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCttt                                                                                   >  2:1794691/1‑100 (MQ=255)
                   tcggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTg                                                                                  <  1:1079035/100‑1 (MQ=255)
                   tcggtGCAGGGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTg                                                                                  >  1:3362938/1‑100 (MQ=255)
                    cggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTg                                                                                  <  1:3795081/99‑1 (MQ=255)
                     ggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGa                                                                                >  2:436117/1‑100 (MQ=255)
                     ggtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGa                                                                                >  2:1636159/1‑100 (MQ=255)
                      gtGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGAt                                                                               >  2:889916/1‑100 (MQ=255)
                         cAGTGAGTGATGTGAAAGGCTTACTTGGACAAAAAATAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTg                                                                            <  2:2235726/100‑1 (MQ=255)
                         cAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTg                                                                            <  1:2741787/100‑1 (MQ=255)
                          agtgagtgATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGc                                                                           >  2:2782849/1‑100 (MQ=255)
                               gtgaTGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAAtt                                                                      >  2:197666/1‑100 (MQ=255)
                               gtgaTGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAAtt                                                                      <  2:24992/100‑1 (MQ=255)
                                 gaTGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAAtttt                                                                    >  1:1906316/1‑100 (MQ=255)
                                  aTGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTg                                                                   >  1:1632791/1‑100 (MQ=255)
                                   tgtgAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGt                                                                  >  2:1481270/1‑100 (MQ=255)
                                    gtgAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTa                                                                 >  1:2575208/1‑100 (MQ=255)
                                     tgAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAg                                                                >  1:3251997/1‑100 (MQ=255)
                                     tgAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAg                                                                >  1:1761030/1‑100 (MQ=255)
                                        aaGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGAcc                                                             <  1:2349015/100‑1 (MQ=255)
                                         ttgcaaatccaaagcattacattaagacgtggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCg                                                            >  1:1146998‑M2/59‑100 (MQ=255)
                                         aGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCg                                                            <  1:3104020/100‑1 (MQ=255)
                                          gCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTa                                                                 <  2:616192/94‑1 (MQ=255)
                                          gCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCgg                                                           <  2:80675/100‑1 (MQ=255)
                                            cTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGAt                                                         >  1:2531460/1‑100 (MQ=255)
                                            cTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGAt                                                         >  1:3584618/1‑100 (MQ=255)
                                            cTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATACGTTTATCAGGCCACGTCTTAATGTAATGTCTAGGATTTGCAAATTTTGTAGAACGGa                                                          >  2:325877/1‑99 (MQ=255)
                                             tcaagTGGACAAGAGCTAACGAAAATGGCCTGATGCGATCTGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCgg                                                           <  1:3717409/93‑1 (MQ=255)
                                              gACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATaa                                                       >  2:510580/1‑100 (MQ=255)
                                              gACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATaa                                                       >  1:1005272/1‑100 (MQ=255)
                                              gACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATaa                                                       >  1:171174/1‑100 (MQ=255)
                                                cGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAgg                                                     <  1:2244117/100‑1 (MQ=255)
                                                cGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAgg                                                     <  2:1756169/100‑1 (MQ=255)
                                                     aCAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTc                                                <  1:3704525/100‑1 (MQ=255)
                                                     aCAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTc                                                >  1:2629225/1‑100 (MQ=255)
                                                     aCAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTc                                                <  1:3530495/100‑1 (MQ=255)
                                                        aTAGCTAACGAAATTGTACTGATGCTATATGTTTAGCAGGCCACGTCTTAATGTAATGCTTTGTATTTGCAAATTTTGTAGACCGAATAAGGAATTTAcg                                             <  2:3491084/100‑1 (MQ=255)
                                                        aTAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcg                                             >  1:2831814/1‑100 (MQ=255)
                                                         tAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgc                                            >  1:2157065/1‑100 (MQ=255)
                                                           gCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgccg                                          <  2:3695709/100‑1 (MQ=255)
                                                            cTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgccgc                                         >  1:3632633/1‑100 (MQ=255)
                                                            cTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgccgc                                         >  2:554487/1‑100 (MQ=255)
                                                            cTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgccgc                                         >  1:1284742/1‑100 (MQ=255)
                                                            cTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCAcgccgc                                         >  1:2817160/1‑100 (MQ=255)
                                                             tAACGAAGATGGCCTGTTGCGATATTTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCa                                        <  2:2613255/100‑1 (MQ=255)
                                                             tAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCa                                        >  1:1835004/1‑100 (MQ=255)
                                                             tAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCa                                        >  1:1533403/1‑100 (MQ=255)
                                                             tAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCa                                        >  1:3837925/1‑100 (MQ=255)
                                                              aaCGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCAt                                       <  2:765954/100‑1 (MQ=255)
                                                              aaCGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCAt                                       >  2:3344940/1‑100 (MQ=255)
                                                              aaCGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCAt                                       >  2:3584840/1‑100 (MQ=255)
                                                               taagacgtggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATc                                      >  1:1672470‑M2/37‑100 (MQ=255)
                                                                cGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATcc                                     >  2:2998656/1‑100 (MQ=255)
                                                                  gacgtggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTCTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCgg                                   >  2:1403536‑M2/34‑100 (MQ=255)
                                                                  aaaaTGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCgg                                   >  1:1109352/1‑100 (MQ=255)
                                                                    cgtggcctgataaacatatcgcatcagaccaCGTCTTAATGTAATGCTTTGGATTTGCAACTTTTGTAGACCGGATAAGGAATGCACGCCGCATCCGGCa                                 >  2:1428698‑M2/32‑100 (MQ=255)
                                                                    aaTGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCa                                 <  2:1106644/100‑1 (MQ=255)
                                                                     gtggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCAt                                >  2:1652494‑M2/31‑100 (MQ=255)
                                                                      tggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATc                               >  2:1923357‑M2/30‑100 (MQ=255)
                                                                      tggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATc                               >  1:2908147‑M2/30‑100 (MQ=255)
                                                                      tggcctgataaacatatcgcatcaggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATc                               >  1:1709032‑M2/30‑100 (MQ=255)
                                                                        GCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATcaa                             <  1:3126542‑M1/100‑1 (MQ=255)
                                                                        GCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATcaa                             >  1:697295‑M1/1‑100 (MQ=255)
                                                                           TGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATcaacaa                          <  2:1399746‑M1/100‑1 (MQ=255)
                                                                              TGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGcatcaacaacgc                       <  1:3866661‑M1/100‑4 (MQ=255)
                                                                              TGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGc                       <  2:1211099‑M1/100‑1 (MQ=255)
                                                                               gCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAgcg                      >  2:2086093/1‑100 (MQ=255)
                                                                               gCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAgcg                      <  2:1592678/100‑1 (MQ=255)
                                                                               gCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAgcg                      >  2:1035627/1‑100 (MQ=255)
                                                                                cGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAgcgc                     >  2:869426/1‑100 (MQ=255)
                                                                                 gATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCa                    >  2:3143725/1‑100 (MQ=255)
                                                                                 gATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCa                    >  1:4050062/1‑100 (MQ=255)
                                                                                     tGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgtt                >  2:2741957/1‑100 (MQ=255)
                                                                                     tGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgtt                >  1:2929041/1‑100 (MQ=255)
                                                                                     tGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCAGGCATCAACAAAGAGCAAgtt                >  2:2320362/1‑100 (MQ=255)
                                                                                      gTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgttg               >  1:126091/1‑100 (MQ=255)
                                                                                       tttATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgttgt              <  2:1307917/100‑1 (MQ=255)
                                                                                       tttATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgttgt              >  2:1875992/1‑100 (MQ=255)
                                                                                       tttATCAGGCCACGTCTTAATGTAATGCTATGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgttgt              <  2:2033240/100‑1 (MQ=255)
                                                                                       tccgatctgccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAgttgt              <  1:1440644‑M2/88‑1 (MQ=255)
                                                                                       attATCAGGCAACGTCTTAATGTAATACTTTGGATTTGCAAATATTGTAGACCGGAAAAGAAATTCACGCCGCATCCGGCATCAACAAAGCGCACgttg               >  2:2899309/2‑99 (MQ=37)
                                                                                             aggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCg        <  2:591940‑M2/94‑1 (MQ=255)
                                                                                              ggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCgg       >  2:3919680‑M2/6‑100 (MQ=255)
                                                                                              ggccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCgg       >  2:3334551‑M2/6‑100 (MQ=255)
                                                                                               gccaCGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGt      <  1:1023271‑M2/96‑1 (MQ=255)
                                                                                                   cGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATc  <  1:1373800/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATAAGGAATTCACGCCGCATCCGGCATCAACAAAGCGCAAGTTGTTATCCGGTTATC  >  NC_000913/4344743‑4344941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.