| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,673,475 | A→G | 50.4% | G9G (GGT→GGC) | mdtJ ← | multidrug efflux system transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,673,475 | 0 | A | G | 50.4% | 1.3 / 147.0 | 111 | G9G (GGT→GGC) | mdtJ | multidrug efflux system transporter |
| Reads supporting (aligned to +/- strand): ref base A (30/25); new base G (31/25); total (61/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
AAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCC > NC_000913/1673378‑1673573 | aaaTCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGcc > 1:1504486/1‑100 (MQ=255) atcatcACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCta > 2:2768275/1‑100 (MQ=255) tcatcaCCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGGCGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCta < 2:2899377/99‑1 (MQ=255) catcaCCCGCATTAAAATAAAGCCGCCATTCCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTAGCGGTAATTTCTGTAGCAATAGCCAGACCtaat < 1:3925946/100‑1 (MQ=255) catcaCCAGCATTGAAATAAAGCCGCCATTTCCCTCACAGACGCTCGCCCATTTCATTGACAGCGTACCGGTACTTTCTGTAGCAATAGCCAGGCCtaat > 2:2559169/1‑100 (MQ=255) catcaCCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCtaat > 1:345274/1‑100 (MQ=255) atcaCCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCtaata > 1:58773/1‑100 (MQ=255) atcaCCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCtaata > 2:1210103/1‑100 (MQ=255) tcaCCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCtaataa < 2:228427/100‑1 (MQ=255) caCCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATaaa > 1:2416862/1‑100 (MQ=255) ccAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAAt < 1:3513556/100‑1 (MQ=255) ccAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAAt < 2:3256024/100‑1 (MQ=255) cAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATc < 2:1386607/100‑1 (MQ=255) cAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACACTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATc > 1:2906419/1‑100 (MQ=255) aGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATcc < 1:901929/100‑1 (MQ=255) cATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaa > 2:1148635/1‑100 (MQ=255) aTTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCaat < 2:2755465/100‑1 (MQ=255) aTTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaat < 2:3682604/100‑1 (MQ=255) aTTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaat < 1:2895326/100‑1 (MQ=255) ttAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCaata < 2:130963/100‑1 (MQ=255) ttAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaata < 1:2383287/100‑1 (MQ=255) tAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCaataa > 1:704802/1‑100 (MQ=255) aaaaTAAAGCCGCCATTTCCCTCACTTACGCTCGCCCCTTTCATTGACAGCGTACCGGTAATTTCTGTACCAATAAACAGGCCTAATAACATCCaattaa > 2:3606547/1‑100 (MQ=255) aaaaTAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCaataaa > 1:3695295/1‑100 (MQ=255) aaaaTAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaataaa > 2:3903367/1‑100 (MQ=255) aaaaTAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaataaa < 1:1210111/100‑1 (MQ=255) aaaTAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAACTCCaataaat > 2:2617615/1‑100 (MQ=255) aaaTAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCaataaat > 2:612123/1‑100 (MQ=255) aaTAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCaataaata < 2:1442271/100‑1 (MQ=255) gccgccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACAtt > 1:1092517/1‑100 (MQ=255) gccgccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACAtt > 1:2374925/1‑100 (MQ=255) gccgccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACAtt > 1:3817828/1‑100 (MQ=255) ccgccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTTTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTg < 2:109998/100‑1 (MQ=255) ccgccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTg > 1:1577349/1‑100 (MQ=255) cagccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATATAATCCAATAAATATACATTg < 2:2515395/98‑1 (MQ=255) cgccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGt < 1:183639/100‑1 (MQ=255) ccATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTcc < 2:40740/100‑1 (MQ=255) cATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCt < 1:3193822/100‑1 (MQ=255) cATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCt < 2:378062/100‑1 (MQ=255) tCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTtctc < 2:1004322/100‑1 (MQ=255) tCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTtctc > 1:2144367/1‑100 (MQ=255) cccTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTcc > 2:258121/1‑100 (MQ=255) ccTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCt < 2:2494299/100‑1 (MQ=255) cTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAag < 2:578106/100‑1 (MQ=255) gACGCTCGCCCATTTCATTGACAGCGTACCAGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAagag < 2:548682/100‑1 (MQ=255) cGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGaa > 1:477476/1‑100 (MQ=255) cGCTCCCCCATTTCATTGACAAAGGACCGGAACTGTCTATAGCAAAAACCACGCATAATAACATCCAATAAATATACATTGTCCTTccccgcctaga > 2:602136/1‑90 (MQ=255) tCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAatta < 2:2226242/100‑1 (MQ=255) cGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCTTGCAGGAGaaggac < 1:3026675/100‑5 (MQ=255) cGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAattat < 2:345271/100‑1 (MQ=255) gCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAattatt > 1:563637/1‑100 (MQ=255) gCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAattatt > 1:3659431/1‑100 (MQ=255) gCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGACCTTCTCCTGCAAGAGAattatt > 2:1620574/1‑100 (MQ=255) gCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAattatt > 1:2309241/1‑100 (MQ=255) gCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAattat > 2:2277514/1‑99 (MQ=255) gCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAACAGCCAGGCCTAATAAAATCCAATTAATATACATTGTCCTTCTCCTGCAAGATAattctt < 2:1763696/100‑1 (MQ=255) cccATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTAttt < 2:3994948/100‑1 (MQ=255) cATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTa > 1:2116786/1‑100 (MQ=255) aTTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTaa < 2:498651/100‑1 (MQ=255) aTTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTaa < 2:3238218/100‑1 (MQ=255) tttCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAAt > 2:304645/1‑100 (MQ=255) tttCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAAt > 2:4109600/1‑100 (MQ=255) cATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAAtttt > 1:73343/1‑100 (MQ=255) ttGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTGTCCTGCAAGAGAATTATTTTAATTTTCg < 1:1343057/100‑1 (MQ=255) ttGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCg < 1:1551279/100‑1 (MQ=255) ttGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCg > 1:2119058/1‑100 (MQ=255) tGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGc < 2:794827/100‑1 (MQ=255) tGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGc < 2:182274/100‑1 (MQ=255) gACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCATTCTCCTGCAAGAGAATTATTTTAAtttt > 2:2915148/1‑96 (MQ=255) aGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTaa < 1:1286990/100‑1 (MQ=255) cGTACCGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAAtt > 1:3271447/1‑100 (MQ=255) cGTACCGGTAATTTCTGTAGCAATAGCCAGACCAAAGAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTCTTTTAATTTTCGCTTAAtc > 2:3454102/1‑99 (MQ=255) aCCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCAGCAAGAGAATTATATTAATTTTAGCTTAATTCAg > 2:3653375/1‑100 (MQ=255) ccGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCa > 2:2047879/1‑98 (MQ=255) cGGTAATTTCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCg < 1:2092413/100‑1 (MQ=255) cGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCg < 1:1144507/100‑1 (MQ=255) ggTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGa > 1:379158/1‑100 (MQ=255) ggTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGa > 1:254246/1‑100 (MQ=255) ggTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGa < 1:3651593/100‑1 (MQ=255) gatAATTTCTGTAGCAATAGCCAGAGCCAAGAAAATCCAAGAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGc < 2:3289512/96‑1 (MQ=255) aTTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAAc > 2:2832655/1‑99 (MQ=255) tttCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCa < 1:3063876/100‑1 (MQ=255) tttCTGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTGAATTAAGCGaaaatt < 2:3514262/100‑4 (MQ=255) tttCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCa < 1:3380882/100‑1 (MQ=255) ttCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaa > 1:1080338/1‑100 (MQ=255) cTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaag > 1:2058255/1‑100 (MQ=255) tGTAGCAGTAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagt > 1:2164228/1‑100 (MQ=255) tGTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagt < 1:2047892/100‑1 (MQ=255) gTAGCAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagta > 1:85944/1‑100 (MQ=255) gTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagta > 1:817981/1‑100 (MQ=255) gCAATATCCAGACCTAAGAAAATCCAATAAATAGACATTGTCCTTCTCCTGCAAGAGAATTATTTTAAGTTTCTCTTAATTCAGCGAAACCaaattaaa > 2:3448313/1‑99 (MQ=255) gCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagtaaag > 1:3896192/1‑100 (MQ=255) gCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagtaaag < 2:2091798/100‑1 (MQ=255) cAATAGCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagtaaagt > 1:1410643/1‑100 (MQ=255) cAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagtaaagt < 1:3209660/100‑1 (MQ=255) cAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCATTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCaaagtaaagt > 2:2261921/1‑100 (MQ=255) gCCAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCa > 1:1841807/1‑100 (MQ=255) cAGGCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAg > 1:236401/1‑100 (MQ=255) cAGACCTCATAAAATCCAATACATTTACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAg < 2:1778420/100‑1 (MQ=255) aCCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTTGTCagccg > 2:804260/1‑95 (MQ=255) | AAATCATCACCAGCATTAAAATAAAGCCGCCATTTCCCTCACTGACGCTCGCCCATTTCATTGACAGCGTACCGGTAATTTCTGTAGCAATAGCCAGACCTAATAAAATCCAATAAATATACATTGTCCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCC > NC_000913/1673378‑1673573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |