| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,987,655 | Δ1 bp | coding (120/633 nt) | yqeH → | putative LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,987,654 | 0 | G | . | 96.4% | 239.6 / 2.8 | 55 | coding (119/633 nt) | yqeH | putative LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base . (25/28); total (25/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
AAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATT > NC_000913/2987558‑2987749 | aaaGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgtgccc > 1:322576/1‑97 (MQ=255)aaaGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGccc < 1:1120635/100‑1 (MQ=255) atgTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATACCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgtgcccg > 1:882499/3‑96 (MQ=255) aGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGcccg < 1:433460/99‑2 (MQ=255) cTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCgaaga > 1:50587/1‑100 (MQ=255) cTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCgaaga > 2:305042/1‑100 (MQ=255) aCATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAg < 1:25315/100‑1 (MQ=255) aTGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGtt > 2:669156/1‑100 (MQ=255) tGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTc > 1:137891/1‑100 (MQ=255) tGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTc < 1:963468/100‑1 (MQ=255) tGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTc > 1:798182/1‑100 (MQ=255) tGCAATAGTTGCTAAATGCATTGCCAAATAATGCCAGACGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGtt > 2:804171/1‑99 (MQ=255) gCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCACACTAGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCa > 2:314416/1‑100 (MQ=255) gCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTc > 2:264823/1‑99 (MQ=255) gCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCa < 2:274377/100‑1 (MQ=255) cAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCat > 1:768525/1‑100 (MQ=255) aaTAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCata < 1:527610/100‑1 (MQ=255) gTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATAtttt < 1:472687/100‑1 (MQ=255) ttGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTa < 1:1207121/100‑1 (MQ=255) cTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATc > 1:147717/1‑100 (MQ=255) cAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgt > 2:1011238/1‑100 (MQ=255) aTGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgtgg < 2:57448/100‑1 (MQ=255) aTGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgtgg < 2:1176100/100‑1 (MQ=255) gCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgtggtg < 2:399173/100‑1 (MQ=255) cATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgtggtgt > 2:1118759/1‑100 (MQ=255) aTTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgtggtgtg < 1:233104/100‑1 (MQ=255) tGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCgtggtgtggt < 1:381276/100‑1 (MQ=255) gCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTa > 2:424890/1‑100 (MQ=255) aataatGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAg < 1:2075/100‑1 (MQ=255) taatGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGt > 1:819571/1‑100 (MQ=255) gCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCt > 2:862958/1‑100 (MQ=255) ccAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCtt > 1:1007911/1‑100 (MQ=255) gaagaGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAAc < 2:681951/100‑1 (MQ=255) gaagaGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAAc < 2:440344/100‑1 (MQ=255) aagaGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACa < 2:13116/100‑1 (MQ=255) aagaGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACa < 1:424894/100‑1 (MQ=255) gTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACaaaaa < 1:987984/100‑1 (MQ=255) tCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACaaaaaa < 1:1011247/100‑1 (MQ=255) cACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAAc < 2:658193/100‑1 (MQ=255) ccGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACca > 1:600919/1‑100 (MQ=255) cgcgTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACcac < 1:1046517/100‑1 (MQ=255) gcgTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACcaca > 2:579292/1‑100 (MQ=255) cAGTATTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCgag < 1:745370/100‑1 (MQ=255) aTTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACACAACACCACAATGCGAGATTa > 2:1082950/1‑100 (MQ=255) aTTGCGCAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTa > 2:361133/1‑100 (MQ=255) gcgcAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGc > 1:329496/1‑100 (MQ=255) gcgcAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGc > 2:749464/1‑100 (MQ=255) cgcAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTAAATTAAAAAAAAACCACAATGCGAGATTAAGCg < 2:824366/100‑1 (MQ=255) gcAAACTCGTGTTTTTGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCgg < 2:137889/100‑1 (MQ=255) tttttGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTg < 1:514073/100‑1 (MQ=255) tttttGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTg < 2:125654/100‑1 (MQ=255) tttGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTc < 1:359349/100‑1 (MQ=255) tttGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTc < 1:932368/100‑1 (MQ=255) ttGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCg < 2:742572/100‑1 (MQ=255) tGTATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGa > 2:729651/1‑100 (MQ=255) tATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGAtt > 2:200781/1‑100 (MQ=255) tATGT‑GCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGAtt > 2:891303/1‑100 (MQ=255) | AAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATT > NC_000913/2987558‑2987749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |