| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 868,748 | Δ1 bp | coding (1229/1872 nt) | gsiA → | glutathione ABC transporter ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 868,746 | 0 | C | . | 95.8% | 202.7 / 5.2 | 49 | coding (1227/1872 nt) | gsiA | glutathione ABC transporter ATPase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (20/26); total (21/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 | |||||||||||
AGGGCGGCGAAATTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGACCCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAGACGCGGCTG > NC_000913/868649‑868840 | aGGGCGGCGAAATTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGAcct < 1:727316/100‑2 (MQ=255) gggCGGCGAAATTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGAcctt > 1:1113189/1‑98 (MQ=255) gcggcgAAATTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGAccttac > 2:1141224/1‑96 (MQ=255) gAAATTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTc < 1:118631/100‑1 (MQ=255) aaaTTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCg < 2:12367/100‑1 (MQ=255) ttATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTg < 1:832752/100‑1 (MQ=255) ttATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTg > 1:1239351/1‑100 (MQ=255) tCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGAc < 1:825866/100‑1 (MQ=255) tCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGAc < 2:273035/100‑1 (MQ=255) tAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCAc > 1:1007629/1‑100 (MQ=255) aaCGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACg < 1:1107013/100‑1 (MQ=255) aaCGGGTAGCGAATCGATACGTTGTCACCCGGCAAACTTCAGGCATTACGCGGGGATATTCAGTTTATTTTTCAGG‑TCCTTACGCTTCGCTGGACCCACg < 2:461304/100‑1 (MQ=255) cGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCCGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCAAGTc < 2:224224/100‑1 (MQ=255) ggTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCa < 2:623000/100‑1 (MQ=255) cAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGAc < 1:893962/100‑1 (MQ=255) aGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGAcc > 2:61008/1‑100 (MQ=255) aGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGATTATTTTTCAGGACCCTTACGCTTCGCTGGACCCACGTCAGAc > 2:833437/1‑100 (MQ=255) gAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATc < 2:1209764/100‑1 (MQ=255) gAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATc > 2:1285458/1‑100 (MQ=255) tCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGt < 2:774409/100‑1 (MQ=255) cGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTg > 1:403558/1‑100 (MQ=255) ccTTGTCACCCGGCAAACTTCAGACATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCg > 1:49148/1‑100 (MQ=255) gTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTa < 1:580997/100‑1 (MQ=255) cACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATc > 2:1031256/1‑100 (MQ=255) ccGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGaa > 1:210300/1‑100 (MQ=255) aaCTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTg < 1:1277157/100‑1 (MQ=255) cTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGGTTCGATAATCGaatcaccgat < 1:416354/100‑9 (MQ=255) cTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCg < 1:1221163/100‑1 (MQ=255) cAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCgtgt > 2:601530/1‑100 (MQ=255) aGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATAGAACCGCTGCGTGTa > 1:1286387/1‑100 (MQ=255) ggCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTac > 1:964111/1‑100 (MQ=255) ggCATTACGCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTac > 1:870852/1‑100 (MQ=255) cttccgatctatTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGtt < 2:203998/91‑1 (MQ=255) aCGCCGGGATATTCACTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGtt < 1:1285469/100‑1 (MQ=255) gCCGGGATATTCAGTTTATTTTTCAGGACCCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGttt < 1:290553/100‑1 (MQ=255) gCCGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTa > 2:989663/1‑100 (MQ=255) cGGGATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTAtt < 2:1015863/100‑1 (MQ=255) gggATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTg < 1:810072/100‑1 (MQ=255) gggATATTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTg > 2:529247/1‑100 (MQ=255) tatTCAGTTTATTTTTCAGGA‑CCTTTCGCTTCGCTGGAGACACGTCATACTATCGGTGATTCTATTATCGAACCGCTGCGTGTATACGGTTTAtt < 2:450416/95‑1 (MQ=255) tatTCAGTTTATTTTGCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCa < 2:1056618/99‑1 (MQ=255) atTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGttagatcggaag > 1:204000/1‑90 (MQ=255) atTCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAgg < 1:587784/100‑1 (MQ=255) ttCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGt > 2:981582/1‑100 (MQ=255) tCAGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTa < 2:210298/100‑1 (MQ=255) aGTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCCGGTaaa > 2:594232/1‑100 (MQ=255) gTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAg > 1:120431/1‑100 (MQ=255) gTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAg > 1:1142153/1‑100 (MQ=255) gTTTATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAg < 2:928419/100‑1 (MQ=255) tttATTTTTCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAGa < 2:1093237/100‑1 (MQ=255) tttttCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAGAcgcg < 1:130254/100‑1 (MQ=255) tCAGGA‑CCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAGACGCGGCTg > 2:427171/1‑100 (MQ=255) | AGGGCGGCGAAATTATCTTTAACGGTCAGCGAATCGATACCTTGTCACCCGGCAAACTTCAGGCATTACGCCGGGATATTCAGTTTATTTTTCAGGACCCTTACGCTTCGCTGGACCCACGTCAGACCATCGGTGATTCGATTATCGAACCGCTGCGTGTACACGGTTTATTGCCAGGTAAAGACGCGGCTG > NC_000913/868649‑868840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |