| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,446,972 | Δ1 bp | coding (312/906 nt) | feaR ← | transcriptional activator for tynA and feaB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,446,969 | 0 | G | . | 95.6% | 192.0 / 3.1 | 45 | coding (315/906 nt) | feaR | transcriptional activator for tynA and feaB |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base . (21/22); total (22/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01 | |||||||||||
ATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAAC > NC_000913/1446877‑1447064 | aTAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGa < 1:10951/100‑1 (MQ=255) tAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAg < 1:1086035/100‑1 (MQ=255) tAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAg < 1:299756/100‑1 (MQ=255) aGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAgg > 2:735082/1‑100 (MQ=255) gTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCa > 1:1237289/1‑100 (MQ=255) gTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCa > 1:656413/1‑100 (MQ=255) tttGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCg > 2:873222/1‑100 (MQ=255) tttGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCg < 2:486276/100‑1 (MQ=255) tttGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCg < 1:774464/100‑1 (MQ=255) tGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAg > 2:945724/1‑100 (MQ=255) tGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAg < 1:627801/100‑1 (MQ=255) gggAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACg > 2:118152/1‑100 (MQ=255) ggAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGt > 2:1184521/1‑100 (MQ=255) naaaTATTGTTCCAGCAGTGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTaa > 2:807704/2‑100 (MQ=255) tatTGGTCCAGCATATTGCGTCGCACAAGTAATGAGATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑CGGCGTGAGGCATCGAGTAACGTa < 2:1246048/95‑1 (MQ=255) ttCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGCCTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAg < 1:216883/100‑1 (MQ=255) tCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAgc < 1:1123279/100‑1 (MQ=255) ccAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAgcg < 1:40965/100‑1 (MQ=255) ccAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAgcg > 2:850146/1‑100 (MQ=255) cagcagAGTCCGTGGCAAAAGTAATGAAAACTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAgcg < 1:996090/99‑1 (MQ=255) agcagAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGcc > 2:392102/1‑100 (MQ=255) gTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCAcc < 2:437377/100‑1 (MQ=255) gTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCAcc < 2:295175/100‑1 (MQ=255) tGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCt > 2:1144810/1‑100 (MQ=255) tGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCt > 2:670631/1‑100 (MQ=255) tGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCt > 1:728068/1‑100 (MQ=255) ggCAAAAGTAATGAAATNTGTNTAGAAGACTCCTGCCAGTAAAGCGAACA‑NGGCGTGAGGCATCGAGTAACGNAATATCNCCAGCGCCAATCTGCACCTg < 2:675739/100‑1 (MQ=255) ggCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTg > 2:738875/1‑100 (MQ=255) ggCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTg > 2:910611/1‑100 (MQ=255) cAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGa > 1:462913/1‑100 (MQ=255) aaTGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATc > 2:318225/1‑100 (MQ=255) gAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTg > 1:491408/1‑100 (MQ=255) gAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTg > 2:251867/1‑100 (MQ=255) aaaTCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGc < 1:945732/100‑1 (MQ=255) tttAGAAGACTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCatta < 1:236350/100‑1 (MQ=255) agaagaCTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTg < 2:446142/100‑1 (MQ=255) gaagaCTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGc > 2:605700/1‑100 (MQ=255) aagaCTCCTGCCAGTAAAGCGAACA‑GGTCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGcc < 2:1258392/100‑1 (MQ=255) aagaCTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGcc < 2:706849/100‑1 (MQ=255) aagaCTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGcc < 1:1114181/100‑1 (MQ=255) aagaCTCCTGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATAGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGcc < 2:723498/100‑1 (MQ=255) ccTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGAcc < 1:117868/100‑1 (MQ=255) tGCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCATCTGACGCTCATCCTGCTCCATTATTGCCTGACCACt > 1:76765/1‑100 (MQ=255) gCCAGTAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTa < 1:404089/100‑1 (MQ=255) tAAAGCGAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTg < 2:284718/100‑1 (MQ=255) gAACA‑GGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAAc > 1:682229/1‑100 (MQ=255) | ATAGGTTTTTGATGGGGAAAATATTGTTCCAGCAGAGTGCGTGGCAAAAGTAATGAAATCTGTTTAGAAGACTCCTGCCAGTAAAGCGAACAGGGGCGTGAGGCATCGAGTAACGTAATATCGCCAGCGCCAATCTGCACCTGACGCTCATCCTGCTCCATTATTGCCTGACCACTAAGCTGAAAAAC > NC_000913/1446877‑1447064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |