| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,701,585 | Δ1 bp | coding (629/1173 nt) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,701,582 | 0 | G | . | 97.8% | 195.6 / ‑2.4 | 46 | coding (626/1173 nt) | malY | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base . (22/22); minor base T (1/0); total (24/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTGGACGTGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTTGGGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCAATATTCCCGCCCTGA > NC_000913/1701489‑1701677 | tgtgGACGTGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTTgggcgag > 2:511114/1‑96 (MQ=255)tgtgGACGTGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTTgggcgag < 1:906078/100‑5 (MQ=255) gtgGACGTGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGagc < 1:426008/100‑1 (MQ=255) gTGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGc < 2:1003496/100‑1 (MQ=255) tGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCa > 2:237222/1‑100 (MQ=255) gCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCat > 1:60004/1‑100 (MQ=255) gCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCat > 1:959552/1‑100 (MQ=255) cGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGGTT‑GGGCGAGCCGACGCat > 2:1045029/1‑99 (MQ=255) aGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTccc < 2:609305/100‑1 (MQ=255) gCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCACATATTCCCt > 1:615175/1‑100 (MQ=255) tGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTgg < 1:1273197/100‑1 (MQ=255) tGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTgg < 2:520487/100‑1 (MQ=255) gagaTCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAg < 1:237224/100‑1 (MQ=255) agaTCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGt > 2:1041722/1‑100 (MQ=255) gaTCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAg < 2:25062/98‑1 (MQ=255) ntCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTaa > 1:1007151/2‑100 (MQ=255) cATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAAtg < 2:60003/100‑1 (MQ=255) tGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAAtgtg < 2:216012/100‑1 (MQ=255) tGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAAtgtg < 2:1272471/100‑1 (MQ=255) ggCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTgg > 1:511958/1‑100 (MQ=255) gtgCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGgag < 2:185127/100‑1 (MQ=255) gtgCGAGCGTCATGGTGTGCGGGTTATTGCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGgag < 2:1086511/100‑1 (MQ=255) ccaGCGTCAAGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGAc > 2:1126066/3‑99 (MQ=255) gCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATCTGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGCGAGTgg > 1:270112/1‑99 (MQ=255) tGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTATTGTGGCTCGCGGAGACTGGGCGTTGc < 1:794500/100‑1 (MQ=255) tGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGc > 2:319175/1‑100 (MQ=255) gtgtGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCtn < 2:1007142/100‑2 (MQ=255) tgtgCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTaa > 1:98505/1‑100 (MQ=255) gtgCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAAc < 1:755762/100‑1 (MQ=255) gCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGt > 1:391331/1‑100 (MQ=255) gCGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGt > 1:693462/1‑100 (MQ=255) cGGGTTATTTCCGATGAAATCCATATGGATATGGTTTGGGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGt > 1:186426/1‑100 (MQ=255) cGGGTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTc > 1:706871/1‑100 (MQ=255) ggTTATTTCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCTTTGCTAACGTCgg < 1:876580/100‑1 (MQ=255) ggTTATTTCCGATGAAATCCATATGGAGATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCgg < 2:108773/100‑1 (MQ=255) tttCCGATGAAATCAATATGGATATGGTTT‑GGGCGAGGAGCCGCATATTACCTGGAGTAATGTGGCGCGAGGAGACTGGGCGTTGCTAACGTCGGGCttg > 2:241661/1‑98 (MQ=255) ttCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCg < 2:628831/99‑1 (MQ=255) ttCCGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGa < 1:960343/100‑1 (MQ=255) tgccGATGAAATCCTTATGGATAT‑GTTTTGGTCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGa > 2:386028/3‑100 (MQ=255) ccGATGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGaa > 2:19230/1‑99 (MQ=255) aTGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGt > 2:657996/1‑100 (MQ=255) tGAAATCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGtt < 1:672323/100‑1 (MQ=255) aaaTCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGATTc < 2:197030/100‑1 (MQ=255) aTCCATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCaa > 2:741081/1‑100 (MQ=255) cATATGGATATGGTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCAatat > 1:65380/1‑100 (MQ=255) atggatatggTTT‑GGGCGAGCAGCCGCATATTCCCTGTAGTTATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCAATATTc < 2:916167/99‑1 (MQ=255) gatatggTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCAATATTCCCGc > 2:505026/1‑100 (MQ=255) ggTTT‑GGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCAATATTCCCGCCCTGa > 1:158560/1‑100 (MQ=255) | TGTGGACGTGCGATGAGCTGGAGATCATGGCTGACCTGTGCGAGCGTCATGGTGTGCGGGTTATTTCCGATGAAATCCATATGGATATGGTTTGGGGCGAGCAGCCGCATATTCCCTGGAGTAATGTGGCTCGCGGAGACTGGGCGTTGCTAACGTCGGGCTCGAAAAGTTTCAATATTCCCGCCCTGA > NC_000913/1701489‑1701677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |