| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,563,518 | (A)5→6 | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,563,513 | 1 | . | A | 98.0% | 171.1 / ‑3.1 | 49 | intergenic (+396/‑79) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (29/19); total (30/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
ATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑AAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG > NC_000913/2563420‑2563607 | aTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaaaaa < 1:758636/100‑2 (MQ=255)aTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaaaaa > 2:1185745/1‑99 (MQ=255) ttttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaaaaat < 2:1044231/100‑3 (MQ=255) tttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaaaaatg < 2:1028815/100‑4 (MQ=255) ttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaaaaatga < 2:395743/100‑5 (MQ=255) ttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaaaaatga > 2:251562/1‑96 (MQ=255) aGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTggn < 2:71364/100‑2 (MQ=255) gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGa > 1:311552/1‑100 (MQ=255) gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGa > 1:447757/1‑100 (MQ=255) aTCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGaa > 1:975624/1‑100 (MQ=255) aTCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGaa > 1:639081/1‑100 (MQ=255) gCTTTTTCCCTTCAGGCATTTTTTTTTTTTTTTTTCAACGAAAGGCAGTTCCCAACAACAAAATAATGATGGGAGG‑TAAAAAATGAAACGGTGCGAAGTg > 2:1194378/1‑100 (MQ=255) cTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTgg < 2:858759/100‑1 (MQ=255) ttttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCt < 1:232655/100‑1 (MQ=255) tCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTa > 1:395152/1‑100 (MQ=255) ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACt > 1:914712/1‑100 (MQ=255) ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACt < 1:397750/100‑1 (MQ=255) ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACt > 1:333062/1‑100 (MQ=255) ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACt > 1:1002148/1‑100 (MQ=255) ttCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTgg < 2:321699/100‑1 (MQ=255) tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGt < 1:603067/100‑1 (MQ=255) tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGt < 2:527760/100‑1 (MQ=255) cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg > 2:1002761/1‑100 (MQ=255) ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTTCCAACAACAAAATAAAGAAGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTgg < 2:1086952/96‑1 (MQ=255) ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg > 2:876043/1‑98 (MQ=255) tttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTa > 1:209160/1‑100 (MQ=255) ttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGAAGGAA‑AAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATg > 2:525080/1‑100 (MQ=255) gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt > 1:1238957/1‑100 (MQ=255) tAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt > 2:68753/1‑100 (MQ=255) aaTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt > 2:58998/1‑99 (MQ=255) aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt > 1:476013/1‑100 (MQ=255) tcaatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGc < 1:273441/100‑1 (MQ=255) aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg < 1:104784/100‑1 (MQ=255) atcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGt > 1:804773/1‑100 (MQ=255) atcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGt > 2:393475/1‑100 (MQ=255) caaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt < 1:1292853/100‑1 (MQ=255) aaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAtt > 1:1162070/1‑100 (MQ=255) aaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAAc > 1:887479/1‑100 (MQ=255) aaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAAc < 1:6223/100‑1 (MQ=255) aaGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACt > 2:610236/1‑100 (MQ=255) aGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtg < 2:639077/100‑1 (MQ=255) cAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGa < 2:758723/100‑1 (MQ=255) ttCCCAACAACAAAATAAAGATGAGAAA‑AAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg < 2:1162059/100‑1 (MQ=255) ccAACAACAAAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg > 1:703860/1‑100 (MQ=255) caacaaAATAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGc > 2:1115464/1‑100 (MQ=255) aaaaTAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATg > 2:355016/1‑100 (MQ=255) aaTAAAGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGAGATGGTAATGTTGGATTGCTGTATTGAACTGTGAAGGAGGAAGCCATGa > 2:1293621/1‑99 (MQ=255) aGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt < 1:1002770/100‑1 (MQ=255) aGATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt < 2:39678/100‑1 (MQ=255) gATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt < 1:68754/100‑1 (MQ=255) gATGGGAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAAGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt > 2:123710/1‑100 (MQ=255) gggAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAAt > 1:876106/1‑100 (MQ=255) ggAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATc > 1:483757/1‑100 (MQ=255) ggAGG‑TAAAAAACGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATc > 1:859000/1‑100 (MQ=255) gAGG‑TAAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg < 1:1185756/100‑1 (MQ=255) | ATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑AAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG > NC_000913/2563420‑2563607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |