New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 394668858 (1.080)24 (0.480) 7/186 6.4 30.6% intergenic (+81/‑12) rrlC/rrfC 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
?NC_000913 = 4171601 NA (NA)intergenic (+57/‑36) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
Rejected: Coverage evenness skew score above cutoff.

AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3946585‑3946688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG  <  NC_000913/4171601‑4171503
                                                                                                                                                                                                            
AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                                          <  1:151374/100‑1
                                                 GAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAG                                                        >  2:543760/1‑100
                                                            TTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTG                                             >  2:736218/1‑100
                                                            TTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTG                                             >  2:677551/1‑100
                                                                        CAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGC                                  >  2:719574/1‑99
                                                                        CAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCC                                 >  2:1051103/1‑100
                                                                         AGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCT                                >  1:447478/1‑100
                                                                          GATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTC                               >  2:1286534/1‑100
                                                                           ATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGC                                  >  2:519527/1‑97
                                                                            TTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCA                              >  1:593113/1‑100
                                                                              AAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACG                            >  2:840032/1‑100
                                                                              AAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCACGG                           >  2:1202118/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGG                           >  2:1154604/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGG                           >  2:980174/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCACGGT                          >  2:324105/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCACGGT                          >  2:166595/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCACGGT                          >  2:1000571/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGT                          >  1:930087/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGT                          >  1:649676/1‑100
                                                                               AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGT                          >  2:82416/1‑100
                                                                                  CAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCA                       >  2:476350/1‑100
                                                                                  CAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCA                       >  2:134640/1‑100
                                                                                     AACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTA                    <  1:677555/100‑1
                                                                                     AACGCAGAAGCGGTCTGATTTAATCTGGATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTA                    <  1:736223/100‑1
                                                                                              GCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTT           <  1:82417/100‑1
                                                                                                  TCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCT       >  1:413374/1‑100
                                                                                                   CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTC      <  2:1019199/100‑1
                                                                                                    TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCA     >  2:1127747/1‑100
                                                                                                    TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCA     >  2:509481/1‑100
                                                                                                    TGATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCA     >  2:572062/1‑100
                                                                                                     GATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA    >  2:340311/1‑100
                                                                                                     GATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA    >  1:73626/1‑100
                                                                                                     GATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA    >  2:733471/1‑100
                                                                                                      ATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAAC   <  2:234784/100‑1
                                                                                                      ATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAAC   <  2:738663/100‑1
                                                                                                      ATTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAAC   >  1:269107/1‑100
                                                                                                       TTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG  <  2:413370/100‑1
                                                                                                       TTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG  <  1:543764/100‑1
                                                                                                                                                                                                            
AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3946585‑3946688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCTC‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG  <  NC_000913/4171601‑4171503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.