New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 216089	NA (NA)	5 (0.130) +TAAAAAACGCGCACTTTGTCAACAATCTGA	4/138	6.2	10.0%	noncoding (63/111 nt)	RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 1691580	65 (1.210)					intergenic (+220/+6)	ydgA/uidC	DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGG  >  NC_000913/215990‑216186                                                                                                    |                                                                                                  gaCAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                   >  1:64464/1‑100 (MQ=255)   cAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                                                                                 <  1:462564/100‑1 (MQ=255)    aGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                                                                <  2:202042/100‑1 (MQ=255)     taaacaaacTCAAAACAGGCCAGAAGGATATATATCAACATTTTGAATTTGCACGTTTTTTGTAGGACGGATAAGGAGTTTACGCAGCATCAGGCCATgn                                                                                               <  2:1218266/99‑2 (MQ=37)     gAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                                               >  2:996411/1‑100 (MQ=255)     gAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                                               >  2:121614/1‑100 (MQ=255)     gAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCACATCCGGCAATgg                                                                                               >  2:842111/1‑100 (MQ=255)      aaacaaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGt                                                                                              <  2:350916/100‑1 (MQ=255)      aaacaaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGt                                                                                              <  2:1130374/100‑1 (MQ=255)        acaaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGc                                                                                            <  2:830333/100‑1 (MQ=255)         caaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCt                                                                                           >  1:181182/1‑100 (MQ=255)           aacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCa                                                                                         >  1:809593/1‑100 (MQ=255)            acGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCaa                                                                                        >  2:418780/1‑100 (MQ=255)               cAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGc                                                                                     >  2:545101/1‑100 (MQ=255)                aaaaCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGcc                                                                                    <  1:461055/100‑1 (MQ=255)                aaaaCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGcc                                                                                    <  1:462752/100‑1 (MQ=255)                 aaaCAGGCCAGATGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCt                                                                                   <  2:1235143/100‑1 (MQ=255)                   aCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGa                                                                                 <  1:46308/100‑1 (MQ=255)                      ggCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTATTTTTTTTAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                                              >  2:1162339/1‑100 (MQ=37)                      ggCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                                              <  2:396253/100‑1 (MQ=255)                       gCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                                              <  2:11892/99‑1 (MQ=255)                         cAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGAc                                                                           <  1:1091912/100‑1 (MQ=255)                             aGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTg                                                                       <  2:1016954/100‑1 (MQ=255)                               gATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGgc                                                                     <  2:76879/100‑1 (MQ=255)                                atatatTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGgcg                                                                    <  2:269346/100‑1 (MQ=255)                                  atatTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGcgcg                                                                  <  1:247640/100‑1 (MQ=255)                                  atatTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGcgcg                                                                  <  2:827401/100‑1 (MQ=255)                                    atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTc                                                                >  2:176999/1‑100 (MQ=255)                                    atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTc                                                                >  2:647031/1‑100 (MQ=255)                                     tttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCt                                                               <  2:613441/100‑1 (MQ=255)                                      ttCAACATTTTGAATTTGCACGTTTTTTTTTTTTTTTTTAAGGAGTTTACGCCGCATCCTGCATTGGTGTTCAACGCCTGATGCGACGTTGGCGCGTCtt                                                              >  2:617560/1‑100 (MQ=16)                                      ttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCtt                                                              <  1:872541/100‑1 (MQ=255)                                       tCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTa                                                             >  1:71645/1‑100 (MQ=255)                                       tCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTa                                                             <  1:319648/100‑1 (MQ=255)                                        cAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTAt                                                            >  2:1035757/1‑100 (MQ=255)                                        cAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTAt                                                            <  1:1162350/100‑1 (MQ=255)                                        cAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTAt                                                            <  1:422100/100‑1 (MQ=255)                                         aaCATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATc                                                           <  2:347920/100‑1 (MQ=255)                                          aCATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCACATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCa                                                          <  2:780280/100‑1 (MQ=255)                                            aTTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                        <  2:450240/100‑1 (MQ=255)                                             ttttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                       >  1:1261071/1‑100 (MQ=255)                                                 gAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                   <  2:71644/100‑1 (MQ=255)                                                         aCGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAcccccc                                           <  1:665644/100‑1 (MQ=255)                                                          cGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCt                                          >  2:478551/1‑100 (MQ=255)                                                           gTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTc                                         <  2:181180/100‑1 (MQ=255)                                                                 tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCt                                   <  1:121616/100‑1 (MQ=255)                                                                     ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAg                               <  1:422763/100‑1 (MQ=255)                                                                      gCCGGATAAGTCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAgg                              <  2:859819/100‑1 (MQ=255)                                                                      gCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAgg                              >  1:175446/1‑100 (MQ=255)                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGc                             <  1:469904/100‑1 (MQ=255)                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGc                             >  1:717021/1‑100 (MQ=255)                                                                         ggATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCgg                           >  2:1062009/1‑100 (MQ=255)                                                                            tAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATa                        <  2:78588/100‑1 (MQ=255)                                                                             aaGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATaa                       >  2:1031882/1‑100 (MQ=255)                                                                              aGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAg                      >  1:427203/1‑100 (MQ=255)                                                                               ggCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAgg                     <  1:1027867/100‑1 (MQ=255)                                                                                gCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAgtc                    <  1:880581/100‑3 (MQ=255)                                                                                gCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGc                    <  2:243461/100‑1 (MQ=255)                                                                                gCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGc                    <  1:59982/100‑1 (MQ=255)                                                                                gCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGc                    <  1:996420/100‑1 (MQ=255)                                                                                 cGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCa                   >  2:286414/1‑100 (MQ=255)                                                                                    ttACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCAttt                <  2:269728/100‑1 (MQ=255)                                                                                     tACGCCGCATCCGGCAATGGTGCTAAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTa               <  2:1081709/100‑1 (MQ=255)                                                                                        gccgcATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACtt            >  1:628455/1‑100 (MQ=255)                                                                                        gccgcATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACtt            <  1:888927/100‑1 (MQ=255)                                                                                         ccgcATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACttt           <  1:418784/100‑1 (MQ=255)                                                                                          cgcATCCGGCAATGGGGCTCACCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTa          <  1:660335/100‑1 (MQ=255)                                                                                            cATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATc        <  2:574567/100‑1 (MQ=255)                                                                                            cATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATc        >  2:223537/1‑100 (MQ=255)                                                                                                  gCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCggg  >  2:1036532/1‑100 (MQ=255)                                                                                                  gCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCggg  >  1:833336/1‑100 (MQ=255)                                                                                                    |                                                                                                  GACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGG  >  NC_000913/215990‑216186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.