Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,242,942	Δ66 bp	coding (510‑575/891 nt)	malG ←	maltose transporter subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4242942	4243007	66	45 [0]	[0] 45	malG	maltose transporter subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4242941	0 (0.000)	41 (0.820)	34/184	0.6	100%	coding (576/891 nt)	malG	maltose transporter subunit
	?	NC_000913	4243008 =	0 (0.000)					coding (509/891 nt)	malG	maltose transporter subunit

AAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAACGCGACC  >  NC_000913/4242909‑4243106                                                                                                    |                                                                                                   gcgataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaa                                                                                                    >  1:605965‑M2/100‑100 (MQ=255)  cgataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaAt                                                                                                   >  1:1129284‑M2/99‑100 (MQ=255)    ataaacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcc                                                                                                 <  1:730120‑M2/4‑1 (MQ=255)    ataaacgacaggacgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcc                                                                                                 >  1:875374‑M2/97‑100 (MQ=255)       aacgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccac                                                                                              >  2:1073411‑M2/94‑100 (MQ=255)         cgacaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATcccaccc                                                                                            <  2:654589‑M2/9‑1 (MQ=255)           acaggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAg                                                                                          <  1:1084543‑M2/11‑1 (MQ=255)             aggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGAt                                                                                        <  1:781816‑M2/13‑1 (MQ=255)             aggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGAt                                                                                        <  2:605961‑M2/13‑1 (MQ=255)              ggatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATa                                                                                       <  1:526398‑M2/14‑1 (MQ=255)               gatgaataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATAc                                                                                      <  1:518584‑M2/15‑1 (MQ=255)                   aataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGa                                                                                  >  2:1258255‑M2/82‑100 (MQ=255)                   aataccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGa                                                                                  >  2:682606‑M2/82‑100 (MQ=255)                     taccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGa                                                                                  >  1:553718‑M2/80‑98 (MQ=255)                       ccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAAt                                                                              >  1:1014119‑M2/78‑100 (MQ=255)                       ccaccgccagaatcggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAAt                                                                              >  2:151277‑M2/78‑100 (MQ=255)                                     ggtactgacagcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAg                                                                <  2:237876‑M2/37‑1 (MQ=255)                                              agcggcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGc                                                       <  1:317892‑M2/46‑1 (MQ=255)                                                  gcaacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCaat                                                   >  1:263792‑M2/51‑100 (MQ=255)                                                   caacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCaatg                                                  <  2:193267‑M2/51‑1 (MQ=255)                                                   caacaggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCaatg                                                  <  1:210763‑M2/51‑1 (MQ=255)                                                        ggacaaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatgg                                             >  1:842214‑M2/45‑100 (MQ=255)                                                           caaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaat                                          <  1:614396‑M2/59‑1 (MQ=255)                                                           caaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaat                                          >  2:1202263‑M2/42‑100 (MQ=255)                                                           caaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaa                                           >  1:1261516‑M2/42‑99 (MQ=255)                                                           caaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGACGTGAGTATTCAGGCCAATgaatggaat                                          >  2:41610‑M2/42‑100 (MQ=255)                                                            aaggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATgaatggaatg                                         >  1:1090743‑M2/41‑100 (MQ=255)                                                              ggcggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGt                                        <  2:479728‑M2/61‑1 (MQ=255)                                                                cggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACt                                     >  1:1026181‑M2/37‑100 (MQ=255)                                                                 ggaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTc                                    >  1:351056‑M2/36‑100 (MQ=255)                                                                  gaaggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAAGGTACTCa                                   <  1:685982‑M2/66‑1 (MQ=255)                                                                    aggcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCAcc                                 <  1:791399‑M2/68‑1 (MQ=255)                                                                      gcctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCa                               >  2:1249803‑M2/31‑100 (MQ=255)                                                                        ctgccacggtgtcgcaccatccagtgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGa                             >  2:738247‑M2/29‑100 (MQ=255)                                                                        ctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGa                             <  2:446407‑M2/72‑1 (MQ=255)                                                                        ctgccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGa                             >  1:1217318‑M2/29‑100 (MQ=255)                                                                          gccacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACg                           >  1:422647‑M2/27‑100 (MQ=255)                                                                            cacggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGAt                         >  1:607661‑M2/25‑100 (MQ=255)                                                                             acggtgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATc                        >  2:1181943‑M2/24‑100 (MQ=255)                                                                                 tgtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAaac                    <  1:1181954‑M2/81‑1 (MQ=255)                                                                                  gtcgcaccatccagcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAaaca                   <  2:1014110‑M2/82‑1 (MQ=255)                                                                                               gcgcaATCCCACCCAGATACGCTAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAAcg       <  1:317137‑M2/94‑1 (MQ=255)                                                                                               gcgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAAcgc      <  2:722521‑M2/95‑1 (MQ=255)                                                                                                cgcaATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGGATTCAGGCCACTGACTGGAATGTACTCACACAGACGCACAAACAACGCATACAAcgcg     >  2:172543‑M2/5‑100 (MQ=255)                                                                                                   aATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAACGCGAcc  <  2:570540‑M2/99‑1 (MQ=255)                                                                                                    |                                                                                                   AAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCCGTGAGTATTCAGGCCAATGAATGGAATGTACTCACCCAGACGATCAAACAACGCATACAACGCGACC  >  NC_000913/4242909‑4243106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑