Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,057,862 | 0 | T | C | 22.2% | 74.3 / 22.7 | 45 | intergenic (+288/+165) | yeeN/asnW | UPF0082 family protein/tRNA‑Asn |
Reads supporting (aligned to +/- strand): ref base T (14/21); new base C (4/6); total (18/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.90e-01 |
AAGACGCGATAGCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAGGT > NC_000913/2057767‑2057957 | aaGACGCGATAGCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGt > 1:34040/1‑100 (MQ=255) aaGACGCGATAGCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGt > 2:886014/1‑100 (MQ=255) aGACGCGATAGCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGtt < 2:1265300/100‑1 (MQ=255) gATAGCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTGCATGGAACAGCGTTTTTGACCTTGCGAATCGTGATGTCTGTTGgggag < 2:469186/100‑1 (MQ=255) gCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGAc < 1:121023/100‑1 (MQ=255) tCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAAttt > 1:958163/1‑99 (MQ=255) cccGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAATTTGc < 1:886021/100‑1 (MQ=255) cATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCAc < 2:214878/100‑1 (MQ=255) cATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCAc < 2:657615/100‑1 (MQ=255) aTAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAATTTGCTCACt < 2:1144413/100‑1 (MQ=255) gCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGc > 2:720571/1‑100 (MQ=255) tttCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTgag < 1:729345/100‑1 (MQ=255) tctcTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGAc < 2:299956/100‑1 (MQ=255) ctTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCg > 1:1009775/1‑100 (MQ=255) ttATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGAt < 1:813192/100‑1 (MQ=255) ttATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGAt < 2:291405/100‑1 (MQ=255) tttGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAgc > 2:147004/1‑100 (MQ=255) ttGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAgcg < 2:78669/100‑1 (MQ=255) tACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCAc < 1:400089/100‑1 (MQ=255) tACTTCATGGAGCAGAGTTTTTGACCTTGCGAGTCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGTCTCGATTAAGCGCACGaaa < 2:358306/99‑1 (MQ=255) aCTTCATGGAACAGAGTTTTTGTTTTTTTTTTTTCTTATGTCTGTTAGGGAGGGACAATTTGCTCACTTAAGCGTGATACTCGCTTCAGCGCAc > 2:459714/1‑94 (MQ=255) aCTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGCCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAaca > 1:548185/1‑100 (MQ=255) cTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAacac > 1:28919/1‑100 (MQ=255) cTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAacac > 2:546703/1‑100 (MQ=255) ttCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAAcaca < 1:1139008/100‑1 (MQ=255) tCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAacattc > 2:498811/1‑97 (MQ=255) cATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGa > 1:233249/1‑100 (MQ=255) aTGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGaa > 1:569897/1‑100 (MQ=255) tGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGaaa < 1:525138/100‑1 (MQ=255) tGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGaaa < 2:388423/100‑1 (MQ=255) gAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATc > 1:457734/1‑100 (MQ=255) gAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATc < 1:261225/100‑1 (MQ=255) agTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCaaaaaa < 1:1041298/100‑1 (MQ=255) gTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAAc < 2:980824/100‑1 (MQ=255) ttttGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAAccc < 1:979863/100‑1 (MQ=255) ttttGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAAccc < 1:1245795/100‑1 (MQ=255) tGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACttt > 2:77011/1‑100 (MQ=255) gCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACtttt < 2:507667/100‑1 (MQ=255) gCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACtttt > 2:1022856/1‑100 (MQ=255) ngAATCGTGATGCCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACttttt > 2:362858/2‑100 (MQ=255) gTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAg < 2:34039/100‑1 (MQ=255) gTGATGTCGGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAg < 2:818552/100‑1 (MQ=255) gTGATGCCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAg < 2:933608/100‑1 (MQ=255) gATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAGGt > 2:16798/1‑100 (MQ=255) gATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAGGt < 1:981600/100‑1 (MQ=255) | AAGACGCGATAGCGACATCCCGCATAAGGCATTTTTCTCTTTATCTTTGTACGGTACTTCATGGAACAGAGTTTTTGACCTTGCGAATCGTGATGTCTGTTGGGGAGGGACAATTTGCTCACTGAAGCGTGAGACTCGATTAAGCGCACGAAACACAGAAATCAAAAAACCCGGTCACTTTTTTACAAGGT > NC_000913/2057767‑2057957 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |