| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,782,076 | T→C | V217V (GTA→GTG) | ypjA ← | adhesin‑like autotransporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,782,076 | 0 | T | C | 98.3% | 200.1 / ‑4.4 | 58 | V217V (GTA→GTG) | ypjA | adhesin‑like autotransporter |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (32/25); total (33/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
CCACCAGAATAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATATACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAG > NC_000913/2781981‑2782171 | ccaccaGAATAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACActc > 1:351102/1‑100 (MQ=255) caccaGAATAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACActct > 2:979557/1‑100 (MQ=255) caccaGAATAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACActct < 1:659518/100‑1 (MQ=255) ccaGAATAGATATGCGTATTTTTTTTTTTTTTTTTACTATTAAGAGACTGAGTTCCTCCTTCAATTGTCGTGTCCAGCGCACGGCTCTCATACACTCttt > 2:520212/1‑100 (MQ=255) aaTAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTc > 2:1006891/1‑100 (MQ=255) aTAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCa < 2:609164/100‑1 (MQ=255) gATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCg > 2:986749/1‑100 (MQ=255) gATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCg < 2:1288942/100‑1 (MQ=255) tatGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGcc > 1:1027134/1‑100 (MQ=255) cGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCGCGGCTCTCATACACTCTTTGCTCCCCGCCAttt > 1:707506/1‑100 (MQ=255) gTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCAtttt > 2:483993/1‑100 (MQ=255) tATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCAttttt > 2:358955/1‑100 (MQ=255) aTTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTa > 1:237423/1‑100 (MQ=255) tGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgtt > 1:1048056/1‑100 (MQ=255) tGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgtt > 1:1048999/1‑100 (MQ=255) gCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgttg < 2:824457/100‑1 (MQ=255) ccGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgttgt < 2:199725/100‑1 (MQ=255) ccGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgttgt > 2:1097831/1‑100 (MQ=255) gTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgttgttg > 2:289314/1‑100 (MQ=255) gTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgttgttg > 1:739828/1‑100 (MQ=255) tGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGgttgttgtt > 2:496406/1‑100 (MQ=255) gACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGttt < 2:243394/100‑1 (MQ=255) cTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCt < 1:979565/100‑1 (MQ=255) cTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCt < 1:749485/100‑1 (MQ=255) tACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTAc > 2:538432/1‑100 (MQ=255) tACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTAc < 1:220222/100‑1 (MQ=255) tATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACtgt > 2:889583/1‑100 (MQ=255) tCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGct < 1:551315/100‑1 (MQ=255) tCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGct > 1:182769/1‑100 (MQ=255) cAGGGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGctc < 2:1171654/100‑1 (MQ=255) cAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGctc > 1:567740/1‑100 (MQ=255) gaCTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGtt > 2:630606/1‑100 (MQ=255) cTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTc < 2:478553/99‑1 (MQ=255) cTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCa > 1:468/1‑100 (MQ=255) tGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCaa > 1:506229/1‑100 (MQ=255) gAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAAc < 1:1109788/100‑1 (MQ=255) aGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACa < 1:128403/100‑1 (MQ=255) aGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACa > 1:1079505/1‑100 (MQ=255) aGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACa < 1:872837/100‑1 (MQ=255) tCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATAc < 2:1048989/100‑1 (MQ=255) tCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATAc < 2:1048046/100‑1 (MQ=255) gCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGt > 1:607154/1‑100 (MQ=255) gCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGt < 1:538436/100‑1 (MQ=255) tCAATCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGac < 1:528703/100‑1 (MQ=255) aaTCGTCGTGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGacca > 1:1046642/1‑100 (MQ=255) cgtcgtGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGAccacca > 2:821332/1‑100 (MQ=255) tcgtGTCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCAtt > 1:102101/1‑100 (MQ=255) gtCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATg < 2:402831/100‑1 (MQ=255) tCCAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATgg < 2:1079495/100‑1 (MQ=255) cAGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGtt > 2:481660/1‑100 (MQ=255) aGCGCACGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTtg < 2:571893/100‑1 (MQ=255) cGGCTCTCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCg > 2:648227/1‑100 (MQ=255) ctctCATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTg < 1:499546/100‑1 (MQ=255) cATATACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACACACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAg > 1:143796/1‑100 (MQ=255) cATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAg < 1:1244808/100‑1 (MQ=255) cATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAg > 2:827570/1‑100 (MQ=255) cATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAg > 1:1278882/1‑100 (MQ=255) cATACACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAg < 1:304226/100‑1 (MQ=255) | CCACCAGAATAGATATGCGTATTTTTTGCCGTTGACTTACTATTCAGAGACTGAGTTCCGCCTTCAATCGTCGTGTCCAGCGCACGGCTCTCATATACTCTTTGCTCACCGCCATTTTTAATGGTTGTTGTTTCTACTGTGCTCTGTTCAACATACTGTCGACCACCATTTATGGTTGTGTTCGTTGCCAG > NC_000913/2781981‑2782171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |