| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,239,779 | C→T | intergenic (+234/‑165) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,239,779 | 0 | C | T | 90.0% | 161.6 / 7.1 | 60 | intergenic (+234/‑165) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| Reads supporting (aligned to +/- strand): ref base C (4/2); new base T (29/25); total (33/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
CCCAAACGGGGCGAGGGGACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGT > NC_000913/3239682‑3239875 | cccAAACGGGGCGAGGGGACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCa < 2:1184713/100‑1 (MQ=255) cAAACGGGGCGAGGGGACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCAtt > 1:448303/1‑100 (MQ=255) aaCGGGGCGAGGGGACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTaa > 2:566249/1‑100 (MQ=255) aCGGGGCGAGGGGACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAg > 2:1170676/1‑100 (MQ=255) ggggCGAGGGGAGTGACCGAGTCCTTTTTTGATGTTGTCATGGGTCTGGAACCCGCACGTTGGCTTTGTTTTTATGTTAAAGCAATGTAATCAATAAGt > 2:118582/1‑99 (MQ=255) gggACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAata < 2:747550/100‑1 (MQ=255) gggACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAata < 1:1247455/100‑1 (MQ=255) gACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATg < 2:420655/100‑1 (MQ=255) gACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTCATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATg < 2:694641/100‑1 (MQ=255) aCTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGa < 1:554873/100‑1 (MQ=255) cTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGAc > 1:132112/1‑100 (MQ=255) gACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACct > 2:729230/1‑100 (MQ=255) gACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACct > 1:204956/1‑100 (MQ=255) gACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACct > 2:1057349/1‑100 (MQ=255) gACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTGGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACct > 1:211400/1‑100 (MQ=255) aCCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACctc > 2:18859/1‑100 (MQ=255) ccGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACctct > 1:179806/1‑100 (MQ=255) cGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACctctc > 1:604387/1‑100 (MQ=255) gAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACctctct > 2:269234/1‑100 (MQ=255) cTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTaaa < 1:219439/100‑1 (MQ=255) tttGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATcc < 2:237928/100‑1 (MQ=255) tGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAg > 1:1216599/1‑100 (MQ=255) gATGTTGTCATCAGTCCGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGc < 2:763691/100‑1 (MQ=255) aTGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCa > 2:722114/1‑100 (MQ=255) catcaGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCg < 2:1254151/100‑1 (MQ=255) catcaGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCg > 1:961233/1‑100 (MQ=255) caGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCtt > 2:211655/1‑100 (MQ=255) caGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCtt < 1:1170687/100‑1 (MQ=255) aGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCAttttttttttt > 2:938140/1‑94 (MQ=255) gTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTcc < 2:424397/100‑1 (MQ=255) gTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTcc < 2:16440/100‑1 (MQ=255) tCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTccc < 1:838192/100‑1 (MQ=255) tCTGGAAGCCGCACGTTGGCTTTATTTGTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTccc < 1:194643/100‑1 (MQ=255) cTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCg > 1:915885/1‑100 (MQ=255) cTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGAATTTTTCGCt > 2:6814/1‑95 (MQ=255) tGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCg < 2:495685/99‑1 (MQ=255) tGGAAGCCGCACGTTGGCTTTATCTTTATGTCAAAGAAATGTAATCATTTAGTTTCAAAATATGACCTCACGTTAAAAAACAGCAttttttccacccc > 2:260541/1‑90 (MQ=255) gAAGCCGCACGTTGGCTTTATTTTTATGTCAACGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAg < 1:242375/100‑1 (MQ=255) aaGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGc < 1:745052/100‑1 (MQ=255) aCGTTGGCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACt > 2:428599/1‑100 (MQ=255) ggCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCACAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCt < 2:913136/100‑1 (MQ=255) ggCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCt < 1:1002297/100‑1 (MQ=255) gCTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACTTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCtt > 1:582738/1‑100 (MQ=255) cTTTATTTTTATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTta < 1:847453/100‑1 (MQ=255) cTTTATTTTTATGTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTta > 1:826545/1‑100 (MQ=255) tATCTTTATGTCAAAGAAATGTAACCATTAAGTTTCACAAGATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATAc < 2:1173327/100‑1 (MQ=255) tttttATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTc > 2:541414/1‑100 (MQ=255) tttttATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTAGTTTCGCGAAGCTGTAACTTTCCTAATACTc > 2:826495/1‑100 (MQ=255) tttATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGa > 2:874148/1‑100 (MQ=255) ttATGTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGAc > 1:553218/1‑100 (MQ=255) gTCAAAGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTg < 1:425738/100‑1 (MQ=255) gTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTg > 1:455701/1‑100 (MQ=255) aaaGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCaa > 1:692089/1‑100 (MQ=255) aaGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCaaa < 1:945668/100‑1 (MQ=255) aaGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCCGCATTTTTCGCTTCCCGACGCTGTAACTTTCCTTATACTCGACCTTg > 2:254421/1‑96 (MQ=255) aGAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAac < 1:18859/100‑1 (MQ=255) gAAATGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAaca > 1:389670/1‑100 (MQ=255) aaaTGTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAacac < 2:842794/100‑1 (MQ=255) gTAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTg < 2:448299/100‑1 (MQ=255) tAATCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGt > 1:477742/1‑100 (MQ=255) | CCCAAACGGGGCGAGGGGACTGACCGAGTCCTTTTTTGATGTTGTCATCAGTCTGGAAGCCGCACGTTGGCTTTATTTTTATGTCAAAGAAATGTAACCATTAAGTTTCAAAATATGACCTCTCTTTAAAATCCAGCATTTTTCGCTTCCCGAAGCTGTAACTTTCCTTATACTCGACCTTGCAAACACTTTGT > NC_000913/3239682‑3239875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |