| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,828,936 | T→C | intergenic (‑271/‑9) | gltS ← / → xanP | glutamate transporter/xanthine permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,828,936 | 0 | T | C | 93.1% | 175.6 / 2.4 | 58 | intergenic (‑271/‑9) | gltS/xanP | glutamate transporter/xanthine permease |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (29/25); total (31/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
TGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCG > NC_000913/3828842‑3829030 | tGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGttt < 2:79122/100‑1 (MQ=255) cATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAACTGCCCGCTTTGCTACCACGGGATTGTTTTc > 1:902845/1‑100 (MQ=255) cATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTc < 2:535116/100‑1 (MQ=255) cATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTc < 2:317048/100‑1 (MQ=255) atctctcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGAt < 2:1205132/97‑1 (MQ=255) tATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATg > 2:200395/1‑100 (MQ=255) ctcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGAtagat > 1:1205143/1‑96 (MQ=255) ctcATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCt < 1:1098798/100‑1 (MQ=255) cATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGt > 2:836430/1‑100 (MQ=255) tttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGTGACTGTTTTCGATGTCTGttt > 2:711696/1‑100 (MQ=255) tttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGttt < 1:1187070/100‑1 (MQ=255) tttAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGttt < 1:1187825/100‑1 (MQ=255) aaTATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCAc < 1:1190079/100‑1 (MQ=255) aGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAg > 1:1039560/1‑100 (MQ=255) gATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTCTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGt > 1:853586/1‑100 (MQ=255) tGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCa > 1:605803/1‑100 (MQ=255) tGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCACGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCCCGAGTCa > 2:1213694/1‑100 (MQ=255) gAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAg > 2:773878/1‑100 (MQ=255) tgtgGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAAt < 2:380372/100‑1 (MQ=255) gtgGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATg < 2:2873/100‑1 (MQ=255) ggCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATgcg > 2:1178303/1‑100 (MQ=255) ggCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATgcg > 2:633885/1‑100 (MQ=255) gCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATgcg < 1:711701/99‑1 (MQ=255) cAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATgcgc > 2:727340/1‑99 (MQ=255) cAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATgcgc < 2:248632/99‑1 (MQ=255) cAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACAGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCa > 2:852249/1‑100 (MQ=255) cGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCCCGAGTCAGAAAATGCGCAACCg > 2:1191492/1‑100 (MQ=255) cGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCCCGAGTCAGAAAATGCGCAACCg > 2:1191607/1‑100 (MQ=255) gCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgc < 1:995331/100‑1 (MQ=255) gCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgc > 1:1233976/1‑100 (MQ=255) cTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTgcg > 2:125775/1‑100 (MQ=255) tttCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCa < 1:621604/100‑1 (MQ=255) tctcCTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGa > 2:642683/1‑100 (MQ=255) ctctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGAc < 2:44146/100‑1 (MQ=255) ctctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGAc < 1:1077370/100‑1 (MQ=255) tctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACt < 2:1003270/100‑1 (MQ=255) ctTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTc < 2:256650/100‑1 (MQ=255) tttCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCa > 2:909026/1‑100 (MQ=255) tttCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCa > 2:500584/1‑100 (MQ=255) tttCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCCCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCa < 1:1191503/100‑1 (MQ=255) tttCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCCCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCa < 1:1191618/100‑1 (MQ=255) tCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCaaa > 2:18455/1‑100 (MQ=255) ggTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAAc < 2:902838/100‑1 (MQ=255) cAGCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGc > 2:851789/1‑100 (MQ=255) gCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGa > 2:17872/1‑100 (MQ=255) gCTAAAATGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGa > 1:89788/1‑100 (MQ=255) aaaTGCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAACAAAGCGAACTg > 2:929219/1‑100 (MQ=255) gCCCGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGAttt < 1:610711/100‑1 (MQ=255) cccGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTa > 1:310180/1‑100 (MQ=255) ccGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTAc > 1:213656/1‑100 (MQ=255) ccGCTTTGCTACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTAc < 1:200397/100‑1 (MQ=255) gCTAGCACGGGACTGTTGTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCt < 2:287373/98‑1 (MQ=255) tACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGaa > 1:253029/1‑100 (MQ=255) tACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGaa < 1:263678/100‑1 (MQ=255) tACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGaa > 2:531529/1‑100 (MQ=255) tACCACGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGa > 2:515684/1‑99 (MQ=255) aCCACGGGACGGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGTCTTAAAACAGCGAACTGATTTACCGTCTTGAAg < 2:856154/100‑1 (MQ=255) cGGGACTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCg < 2:350742/100‑1 (MQ=255) | TGCATTTATCTCATTTAAATATTTAGATGAGGATGTGGCAAACGTTTGCTTTTCTCTTTCGGTCAGCTAAAATGCCCGCTTTGCTACCACGGGATTGTTTTCGATGTCTGTTTCCACCCTCGAGTCAGAAAATGCGCAACCGGTTGCGCAGACTCAAAACAGCGAACTGATTTACCGTCTTGAAGATCG > NC_000913/3828842‑3829030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |