| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,251,287 | T→C | pseudogene (327/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,251,287 | 0 | T | C | 96.8% | 209.6 / ‑2.1 | 62 | pseudogene (327/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (34/26); total (35/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 | |||||||||||
GTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAA > NC_000913/4251192‑4251381 | gtgATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTc > 2:1279577/1‑100 (MQ=255)gtgATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTc > 1:212056/1‑100 (MQ=255) tgATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTcg < 1:57749/100‑1 (MQ=255) gATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTcgc > 2:1270693/1‑100 (MQ=255) aTTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTcgcg < 2:1183186/100‑1 (MQ=255) aTTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTcgcg < 2:888325/100‑1 (MQ=255) ttttATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGaa > 1:1266921/1‑100 (MQ=255) tttATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAAt > 1:1170238/1‑100 (MQ=255) tttATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAAt < 1:1274040/100‑1 (MQ=255) ttATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATg < 2:1291163/100‑1 (MQ=255) tATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGt > 2:1104009/1‑100 (MQ=255) aTCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTc > 1:569098/1‑100 (MQ=255) tCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCa > 2:72280/1‑100 (MQ=255) tCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCa > 2:414889/1‑100 (MQ=255) cAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAg < 1:998396/100‑1 (MQ=255) cAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAg < 1:749101/100‑1 (MQ=255) cAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAg < 2:1128638/100‑1 (MQ=255) gAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGa < 1:465929/100‑1 (MQ=255) aGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGaa < 1:972191/100‑1 (MQ=255) gtggtgAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGaaa < 1:901632/100‑1 (MQ=255) ggtgAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAAtt > 2:768257/1‑100 (MQ=255) gtgAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTc > 1:208360/1‑100 (MQ=255) gAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCaa > 1:446736/1‑100 (MQ=255) tgtCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTc < 1:152424/100‑1 (MQ=255) gtCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCg > 1:621630/1‑100 (MQ=255) gtCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCg > 1:451099/1‑100 (MQ=255) ctgttCAGCAAGAATATTTTTTATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTc < 2:1170599/93‑1 (MQ=255) tttCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAAt < 1:1104019/100‑1 (MQ=255) tttCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAAt > 1:1063668/1‑100 (MQ=255) taGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGt < 2:719587/99‑1 (MQ=255) cAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGt > 2:385543/1‑100 (MQ=255) aGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCACAGTAACTTTCGCGAATGTCGGATTAGAAATTCAAACTTCGATAATTGta > 1:719592/1‑99 (MQ=255) gCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTa < 1:1197924/100‑1 (MQ=255) gCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTa < 1:446640/100‑1 (MQ=255) cAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTAt > 2:488313/1‑100 (MQ=255) aaaaaTATTCTTGATACATTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTa < 2:1186575/98‑1 (MQ=255) aaTATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCttt > 1:520045/1‑100 (MQ=255) atatTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTa < 1:1279588/100‑1 (MQ=255) tatTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTAc < 2:849154/100‑1 (MQ=255) ttaTACAGTTGACTTCTCGCAGAGTACAATTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCACACTTCGATAATTGTTATCTTTACGCTTCg > 2:458444/3‑100 (MQ=255) tGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCg < 2:826224/100‑1 (MQ=255) cAGTTGACTTCTCTCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACtt > 1:882146/1‑100 (MQ=255) gACTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACca > 2:956636/1‑100 (MQ=255) aCTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGCTTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcag > 1:1105347/1‑100 (MQ=255) aCTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcag < 1:768262/100‑1 (MQ=255) cTTCTCGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcaga > 2:573749/1‑100 (MQ=255) tctcGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcagagc > 2:641006/1‑100 (MQ=255) tctcGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcagagc < 2:718241/100‑1 (MQ=255) cGCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcagagcaga > 1:1169758/1‑100 (MQ=255) gCAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACcagagcagag > 1:860462/1‑100 (MQ=255) cAGAGTCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGt > 1:1160028/1‑100 (MQ=255) tCAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTtctg < 1:385547/100‑1 (MQ=255) cAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTtctgt > 2:1047035/1‑100 (MQ=255) cAACTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTtctgt > 1:236892/1‑100 (MQ=255) aCTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTtctgtct < 2:791753/100‑1 (MQ=255) cTTGGTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTtctgtctg < 1:381808/100‑1 (MQ=255) gTCATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCaa > 1:554768/1‑100 (MQ=255) cATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAg > 1:401789/1‑100 (MQ=255) cATAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAg < 1:929254/100‑1 (MQ=255) aTAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGa > 1:1173126/1‑100 (MQ=255) tAGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGaa > 1:777325/1‑100 (MQ=255) aGTAACTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGaaa > 1:136034/1‑100 (MQ=255) | GTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAA > NC_000913/4251192‑4251381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |