| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,551,633 | A→G | intergenic (‑337/‑3) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,551,633 | 0 | A | G | 97.3% | 127.8 / NA | 37 | intergenic (‑337/‑3) | gntP/uxuA | fructuronate transporter/mannonate hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (20/16); minor base C (1/0); total (21/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGC > NC_000913/4551536‑4551729 | aCGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTc < 1:578878/100‑1 (MQ=255) cGCCACGGCTGCGGTCTGGTTTTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCa < 2:949374/100‑1 (MQ=255) cGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCa < 2:727117/100‑1 (MQ=255) cACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATgg < 2:852610/100‑1 (MQ=255) cACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATgg < 1:170708/100‑1 (MQ=255) cGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGaa > 1:924172/1‑100 (MQ=255) ggCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTTTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAAc < 2:696283/100‑1 (MQ=255) gCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGAc < 1:1144382/100‑1 (MQ=255) cGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGAcc < 1:237295/100‑1 (MQ=255) gTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTg > 1:469239/1‑100 (MQ=255) tGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGgcg < 1:66108/100‑1 (MQ=255) tGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGgcg < 1:536033/100‑1 (MQ=255) gttgttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCt > 1:1092728/1‑100 (MQ=255) ttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTa < 2:1198085/100‑1 (MQ=255) ccGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGcc > 2:202411/1‑100 (MQ=255) ccGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAACTCATGGAACAGACCTGGCGCTGGTACGGcc > 2:519513/1‑100 (MQ=255) tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc > 2:409769/1‑100 (MQ=255) tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc > 2:897480/1‑100 (MQ=255) cTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGAt > 2:1262280/1‑100 (MQ=255) aaaCAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATcc > 2:1119292/1‑100 (MQ=255) cTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGATCGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTc < 2:21070/100‑1 (MQ=255) cAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCttt < 2:469235/100‑1 (MQ=255) ggTTCCGAGTCGCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGc < 2:1261129/100‑1 (MQ=255) gTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCt > 2:1162072/1‑100 (MQ=255) tctcTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCg > 1:196448/1‑100 (MQ=255) tctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTc > 1:1116322/1‑100 (MQ=255) tctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTc < 1:202413/100‑1 (MQ=255) tgtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcggg > 1:110467/1‑100 (MQ=255) tgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcgggcg < 2:1043951/100‑1 (MQ=255) ggAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGgcgc > 2:886856/1‑100 (MQ=255) ggAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGgcgc > 1:1189315/1‑100 (MQ=255) cACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTgg > 2:195671/1‑100 (MQ=255) gtgAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGt > 2:581372/1‑100 (MQ=255) tgAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGtt > 1:619196/1‑100 (MQ=255) gAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTa > 2:1065971/1‑100 (MQ=255) agagGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACcg > 1:273294/1‑100 (MQ=255) agagGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACcg > 1:273423/1‑100 (MQ=255) aaagTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGc > 2:692723/1‑100 (MQ=255) | ACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGC > NC_000913/4551536‑4551729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |