| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 796,681 | C→A | A43D (GCC→GAC) | modC → | molybdate ABC transporter ATPase; chlorate resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 796,681 | 0 | C | A | 98.2% | 184.8 / ‑3.4 | 55 | A43D (GCC→GAC) | modC | molybdate ABC transporter ATPase; chlorate resistance protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (28/26); total (28/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 | |||||||||||
GCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAA > NC_000913/796585‑796777 | gCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACAt > 1:1265745/1‑100 (MQ=255) ccATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGt > 1:541025/1‑100 (MQ=255) ccATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGt > 2:732419/1‑100 (MQ=255) ccATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGt > 1:84505/1‑100 (MQ=255) cATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTg < 1:433053/100‑1 (MQ=255) tGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGAc < 1:1253851/100‑1 (MQ=255) tGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGAc < 1:297893/100‑1 (MQ=255) ccTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTg < 2:457675/100‑1 (MQ=255) aTTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGcc > 1:158489/1‑100 (MQ=255) ttAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGccc < 2:272124/100‑1 (MQ=255) aaTGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCgt > 2:667342/1‑99 (MQ=255) aTGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCgta > 1:1186929/1‑98 (MQ=255) aTGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCgta > 1:517399/1‑98 (MQ=255) cGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAgg > 1:350303/1‑100 (MQ=255) cGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAg < 2:752250/99‑1 (MQ=255) cTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACAGCAGTGGACTGACGCGCCCGTAAAAAGGGc < 2:494693/100‑1 (MQ=255) cttccgatctgCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGa < 2:633008/90‑1 (MQ=255) cccGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGa > 1:780185/1‑100 (MQ=255) tGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCTGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGAATGTCCTc < 2:684884/100‑1 (MQ=255) gCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGaagatcggaag > 1:633012/1‑90 (MQ=255) gCATCACTGCTATCTTTGGCGTCTCCGGCGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCaa > 2:127793/1‑100 (MQ=255) aTCACTGCTATCTTTGGCGTCGCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATg < 1:1035747/100‑1 (MQ=255) cACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATggg > 1:1038839/1‑100 (MQ=255) gCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCggg < 1:3050/100‑1 (MQ=255) tcgttGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGCACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACt < 2:491808/97‑1 (MQ=255) cTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTa > 1:1185172/1‑100 (MQ=255) tGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAat < 1:291781/100‑1 (MQ=255) tGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGCACTAAat > 2:1288128/1‑100 (MQ=255) ggCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAatg < 2:158487/100‑1 (MQ=255) gCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAatga < 1:531560/100‑1 (MQ=255) gCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAatga < 2:541021/100‑1 (MQ=255) cGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAatgat > 1:738738/1‑100 (MQ=255) gTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAatgatg > 1:1119581/1‑100 (MQ=255) tctcCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGc < 1:1004792/100‑1 (MQ=255) ctcCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGcc < 2:463990/100‑1 (MQ=255) tcCGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCg > 2:1232715/1‑100 (MQ=255) ccGGTGCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGa < 1:803424/100‑1 (MQ=255) gCCGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAg > 1:997213/1‑100 (MQ=255) ccGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAgg < 2:1001041/100‑1 (MQ=255) ccGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAgg < 1:1166815/100‑1 (MQ=255) ccGGAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAgg < 1:49969/100‑1 (MQ=255) ggAAAAACTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTa > 1:105696/1‑100 (MQ=255) aCTTCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGcc > 1:699812/1‑100 (MQ=255) ttCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTg < 2:699808/100‑1 (MQ=255) ttCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATAAAGAAGAAAAAGGTATCTGCCTg < 2:997204/100‑1 (MQ=255) tCGCTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGa > 2:484123/1‑100 (MQ=255) cTGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGc < 2:400769/100‑1 (MQ=255) tGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGcc > 2:1270894/1‑100 (MQ=255) tGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGcc < 2:10674/100‑1 (MQ=255) tGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGcc < 1:732424/100‑1 (MQ=255) tGATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGcc > 1:720743/1‑100 (MQ=255) gATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCg > 2:198897/1‑100 (MQ=255) gATTAACGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCg > 1:471893/1‑100 (MQ=255) aaCGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGaaa > 1:482072/1‑100 (MQ=255) aCGACATCAGTGGACTGACGCGCCCGTAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGaaaa > 2:1284259/1‑100 (MQ=255) | GCAACCATTGCCTGACTATTAATGAAACGCTGCCCGCCAATGGCATCACTGCTATCTTTGGCGTCTCCGGTGCCGGAAAAACTTCGCTGATTAACGCCATCAGTGGACTGACGCGCCCGCAAAAAGGGCGGATTGTCCTCAATGGGCGGGTACTAAATGATGCCGAAAAAGGTATCTGCCTGACGCCGGAAAA > NC_000913/796585‑796777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |