| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 914,948 | A→G | intergenic (‑91/+404) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 914,948 | 0 | A | G | 97.9% | 164.4 / ‑4.3 | 48 | intergenic (‑91/+404) | ybjE/aqpZ | putative transporter/aquaporin Z |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (25/22); total (25/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 | |||||||||||
AAACATGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAATGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTTGGTGGCGTCAAA > NC_000913/914852‑915040 | aaaCATGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAgtgt < 1:488365/100‑1 (MQ=255) aaCATGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGtt > 1:689604/1‑100 (MQ=255) aCATGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTa > 1:576333/1‑100 (MQ=255) cATGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTa > 1:779744/1‑99 (MQ=255) aTGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATg < 2:66845/100‑1 (MQ=255) tGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGc > 1:26743/1‑100 (MQ=255) tGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAATGTTATGc < 2:1023891/100‑1 (MQ=255) gAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGAAAAGTTGCAATTAAAAGGAAGTGTTATGCa > 1:601732/1‑100 (MQ=255) aCCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAg < 2:866124/100‑1 (MQ=255) cccAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAgg > 2:989422/1‑100 (MQ=255) aGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGc < 2:1012785/100‑1 (MQ=255) aGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGc < 1:392343/100‑1 (MQ=255) ttGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTag < 1:158563/100‑1 (MQ=255) tGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTaga > 1:140546/1‑100 (MQ=255) tGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTaga > 1:1242325/1‑100 (MQ=255) tGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTa < 1:68939/98‑1 (MQ=255) cAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGt < 2:1206654/100‑1 (MQ=255) aaGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTAt > 2:162714/1‑100 (MQ=255) aGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGATCAGTAGAGTAtt > 2:1243167/1‑100 (MQ=255) aTGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCg < 2:1259290/100‑1 (MQ=255) aGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGtttt < 1:992889/100‑1 (MQ=255) aGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATAAAAAGGAAGTGGTATGCATAAGGAGCAGTAGAGTATTCGtt > 2:820988/1‑98 (MQ=255) gTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCAGAAGGAGCAGTAGAGTATTCGTTTTc > 2:1215101/1‑100 (MQ=255) gAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCAtt < 2:950203/100‑1 (MQ=255) gAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCAtt < 2:1281707/100‑1 (MQ=255) aTGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTtttaatttaa > 2:262740/1‑100 (MQ=255) cgATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAGAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGata > 2:723946/1‑100 (MQ=255) acacacTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCtt > 1:1223576/1‑100 (MQ=255) cacacTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTg > 2:1023147/1‑100 (MQ=255) acacTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTgc < 2:412164/100‑1 (MQ=255) cacTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTgcg < 1:585194/100‑1 (MQ=255) ctactGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCt > 1:134215/1‑100 (MQ=255) ctGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTa < 2:443958/100‑1 (MQ=255) tGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTaa < 1:414898/100‑1 (MQ=255) gAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAAt > 2:1121690/1‑100 (MQ=255) gAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAAt < 2:825700/100‑1 (MQ=255) gAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAAt > 2:640348/1‑100 (MQ=255) gAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGCAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAAt < 2:711217/100‑1 (MQ=255) aaaGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAAtt < 1:723951/100‑1 (MQ=255) gAAGGACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAAc < 1:1243178/100‑1 (MQ=255) aaGGACGAGTAAAGTTGCAATTATAAGGAAGTGTTATGCATAAGGTGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAAc < 2:1157631/99‑1 (MQ=255) gACGAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCa > 1:416496/1‑100 (MQ=255) gAGTAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCg > 2:122249/1‑100 (MQ=255) tAAAGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATg < 1:1132398/100‑1 (MQ=255) aGTTGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTtg > 2:200216/1‑100 (MQ=255) tGCAATTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTtggtg < 1:761964/100‑1 (MQ=255) aaTTAAAAGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTTGGTGGCg > 2:556644/1‑100 (MQ=255) aaaGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTTGGTGGCGTCaaa > 1:1240078/1‑100 (MQ=255) aaaGGAAGTGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTTGGTGGCGTCaaa > 1:1034162/1‑100 (MQ=255) | AAACATGAAAACCCAGTCCTTGCAAAGATGAAGTCGAAATGCGCGATGACACACTACTGAAAGCGGAAGGACGAGTAAAGTTGCAATTAAAAGGAAATGTTATGCATAAGGAGCAGTAGAGTATTCGTTTTCATTTAAAGATATTCTTGCGCTTTAATTACAAACTGCACCGATGTTGGTGGCGTCAAA > NC_000913/914852‑915040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |