| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,105,806 | T→C | intergenic (+81/‑14) | ymdA → / → ymdB | uncharacterized protein/O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,105,806 | 0 | T | C | 96.8% | 204.2 / ‑2.0 | 62 | intergenic (+81/‑14) | ymdA/ymdB | uncharacterized protein/O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (32/28); total (34/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 | |||||||||||
ACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTC > NC_000913/1105709‑1105899 | aCATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGgcgt < 2:931149/100‑1 (MQ=255) cATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTa > 1:80570/1‑100 (MQ=255) aTCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTaa > 1:1113843/1‑100 (MQ=255) tCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAag > 1:1264276/1‑100 (MQ=255) tCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAag < 2:441836/100‑1 (MQ=255) cGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGGCTGCTGTACACTTAAGAAACAAGAAGGCGTAagg > 2:1142705/1‑100 (MQ=255) aaTATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAaggag > 2:104950/1‑100 (MQ=255) atatAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAaggagg > 2:662430/1‑100 (MQ=255) taACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGt > 1:370517/1‑100 (MQ=255) aCTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTa > 2:1162430/1‑100 (MQ=255) attttCTAAACAACTCTCGTTTTTGCGCAGCAAAATCCAAATTAACCAAAAAGTCTTCTCTACACTTAAGAAACAAGCAGGCGTTAGGAGGCGTTATGaa < 2:589572/98‑1 (MQ=255) gTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGaaa > 2:837972/1‑100 (MQ=255) tGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAAcgcg > 2:1123641/1‑100 (MQ=255) tGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAAcgcg < 1:1001837/100‑1 (MQ=255) caacTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTAtt < 1:1162441/100‑1 (MQ=255) cTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCAt > 1:151906/1‑100 (MQ=255) cTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCAt > 1:871188/1‑100 (MQ=255) tCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCAtg < 1:1040493/100‑1 (MQ=255) cACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCAtg > 2:580659/1‑99 (MQ=255) cGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCAtgttg < 1:519314/100‑1 (MQ=255) cGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCAtgttg > 1:195351/1‑100 (MQ=255) tGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGc < 1:1189218/100‑1 (MQ=255) tGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGc < 1:980616/100‑1 (MQ=255) cTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAg > 1:547754/1‑100 (MQ=255) aGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAggg > 2:1290506/1‑99 (MQ=255) cAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGa > 2:334338/1‑100 (MQ=255) cAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGa < 1:1241538/100‑1 (MQ=255) aGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGat > 1:122188/1‑100 (MQ=255) aGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGat > 1:1075264/1‑100 (MQ=255) aGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGat > 1:649883/1‑100 (MQ=255) ttccgatctgATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGTCGTTATGAAAACGCGTATTCATGTCGTGCAGGGTGata < 2:803858/91‑1 (MQ=255) gAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGata > 1:845557/1‑100 (MQ=255) aTGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGAAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTAc > 2:820842/1‑99 (MQ=255) cGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCaaa < 2:80569/100‑1 (MQ=255) gATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGataagatcggaa > 1:803863/1‑91 (MQ=255) aaCCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGcc < 2:366965/100‑1 (MQ=255) ccAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAAGGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGt > 2:916908/1‑100 (MQ=255) ccAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGt > 1:724380/1‑100 (MQ=255) ccAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGt > 1:640990/1‑100 (MQ=255) ccAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGt > 1:403491/1‑100 (MQ=255) ccAAAAAGCCTGCTGTACACCTAAGACACACGAAGGCGTAAGGAGGCGTTATAAACACGCGTATTCATGTTATGCAGGGTGCTATTAGAAAACTCGCCg > 2:1198060/1‑99 (MQ=255) cAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGtt > 1:48741/1‑100 (MQ=255) aaaaaGCCTGCTGTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGttn < 2:845551/100‑2 (MQ=255) aGCCTGCTGTACACTTAAGAAACAATAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGAtgt < 2:1059920/100‑1 (MQ=255) tgctgTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGAtt > 2:547782/1‑100 (MQ=255) tgctgTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGAtt < 2:104680/100‑1 (MQ=255) tgTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCCTGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATtgtg < 2:725750/100‑1 (MQ=255) tgTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATtgtg < 2:1075254/100‑1 (MQ=255) tgTACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATtgtg < 2:535470/100‑1 (MQ=255) tctACACTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATtgtg < 2:793418/98‑1 (MQ=255) acacTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAAt < 1:662434/100‑1 (MQ=255) acacTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAAt < 1:1132395/100‑1 (MQ=255) cacTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATg < 2:1264265/100‑1 (MQ=255) acTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGc > 1:6731/1‑100 (MQ=255) cTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCg > 1:1070465/1‑100 (MQ=255) cTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCg < 2:451499/100‑1 (MQ=255) cTTAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCg > 1:828250/1‑100 (MQ=255) ttAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCgg < 2:878328/100‑1 (MQ=255) tAAGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGc < 1:1208831/100‑1 (MQ=255) aaGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCt < 2:232701/100‑1 (MQ=255) aaGAAACAAGAAGGCGTAACGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCt < 1:1123651/100‑1 (MQ=255) aGAAACAAGAAGGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTa > 1:582321/1‑100 (MQ=255) agaagGCGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTc < 2:1113833/100‑1 (MQ=255) | ACATCGAATATAACTAAGTTTCTGAACAACTCACGTTGCTGAGCAGAAAAATGCGATTTAACCAAAAAGCCTGCTGTACACTTAAGAAACAAGAAGGTGTAAGGAGGCGTTATGAAAACGCGTATTCATGTTGTGCAGGGTGATATTACCAAACTGGCCGTTGATGTGATTGTGAATGCGGCTAATCCGTC > NC_000913/1105709‑1105899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |