| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,401,718 | A→C | V19G (GTC→GGC) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,401,718 | 0 | A | C | 89.2% | 209.3 / 12.6 | 65 | V19G (GTC→GGC) | abgT | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (3/4); new base C (31/27); total (34/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCGTTGTTGTTGTTATT > NC_000913/1401622‑1401814 | ccAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGcccc > 1:205394/1‑100 (MQ=255)ccAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGAccc > 1:261167/1‑100 (MQ=255) aaaGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAg > 1:934580/1‑100 (MQ=255) ggCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCa < 1:379350/100‑1 (MQ=255) ccGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATa > 1:475974/1‑100 (MQ=255) cGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATag > 1:284405/1‑100 (MQ=255) ggcAAAATTGCCGTCGTCACCATGAGTACGATAATCTAATATATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATaga < 1:1169710/98‑1 (MQ=255) gACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATaga < 1:1276952/100‑1 (MQ=255) gACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGGTACCAATTCTTTCTCCCCAGCCATaga > 1:844904/1‑100 (MQ=255) gatctttGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGc < 1:16350/95‑1 (MQ=255) aTTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTcc > 1:637480/1‑100 (MQ=255) ttGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGcagatc > 2:16350/1‑95 (MQ=255) tGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCg < 1:260042/100‑1 (MQ=255) tGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCg < 1:570359/100‑1 (MQ=255) atcgtcACCATGAGTACGATCATCAAATATATAAAGTGCACCAAAGGATGGAGAACCTTGTTACCAATTCTTTCGCCCCATCCATAGAGCTTCCCGGAtt < 2:1153529/99‑1 (MQ=255) tcgtcACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTg < 2:390002/100‑1 (MQ=255) cACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGggag < 1:59143/100‑1 (MQ=255) aCCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGCTTCCCGGATTGggagg > 2:1152579/1‑100 (MQ=255) ccATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGggagga > 1:587450/1‑100 (MQ=255) ccATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGggagga > 2:967087/1‑100 (MQ=255) cATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGgac < 2:1000020/100‑1 (MQ=255) cATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGgac < 1:1138760/100‑1 (MQ=255) tGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGgacga > 1:936978/1‑100 (MQ=255) gAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGgacgac < 2:189308/100‑1 (MQ=255) gTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACgg > 1:875696/1‑100 (MQ=255) tACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGt < 2:1019057/100‑1 (MQ=255) tACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGt < 1:1013619/100‑1 (MQ=255) tAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGa < 2:570165/100‑1 (MQ=255) aTCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATg > 2:76539/1‑100 (MQ=255) tCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGa > 2:642632/1‑100 (MQ=255) aaaTAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACa < 1:774349/100‑1 (MQ=255) aaaTAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGAc < 1:926028/99‑1 (MQ=255) aaaTAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACa < 1:1152590/100‑1 (MQ=255) aaTAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACAt < 2:162578/100‑1 (MQ=255) tAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATAc > 2:1102189/1‑100 (MQ=255) gATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTc > 2:299552/1‑100 (MQ=255) gATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTc < 2:934572/100‑1 (MQ=255) tAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCAt > 1:701830/1‑100 (MQ=255) gagCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGc > 1:663952/1‑100 (MQ=255) gCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCAt > 1:738807/1‑100 (MQ=255) cAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCAtt < 1:983659/100‑1 (MQ=255) aGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTc > 2:1100846/1‑100 (MQ=255) aaGGATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCg > 1:778920/1‑100 (MQ=255) ggATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGgt > 1:59608/1‑100 (MQ=255) ggATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGgt > 1:749254/1‑100 (MQ=255) gATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGgtt > 2:209870/1‑100 (MQ=255) gATGGGGAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGgtt < 2:205392/100‑1 (MQ=255) gggAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGttgttg < 2:284402/100‑1 (MQ=255) gggAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGttgttg > 2:1256922/1‑100 (MQ=255) gggAACCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGttgttg > 1:1208625/1‑100 (MQ=255) aCCTTGTTACCAATTCTTTCGCCCCAGCCATAGAGCCTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGtt < 1:596624/100‑1 (MQ=255) tACCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttg > 1:283724/1‑100 (MQ=255) aCCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgt > 1:1191645/1‑100 (MQ=255) aCCAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgt > 1:708841/1‑100 (MQ=255) ccAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgtt > 1:419079/1‑100 (MQ=255) ccAATTCTGTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgtt < 2:300858/100‑1 (MQ=255) cgatcttttCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttg < 1:981472/94‑1 (MQ=255) cAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttg < 2:844898/100‑1 (MQ=255) cAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttg < 2:936944/100‑1 (MQ=255) cAATTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgtt > 2:86702/1‑99 (MQ=255) aaTTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttgt < 2:1005322/100‑1 (MQ=255) aaTTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttgt > 2:692222/1‑100 (MQ=255) aTTCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTACTCGGTTGTTGTGTTTGGgttgttgtt > 1:1280901/1‑100 (MQ=255) ttCTTTCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttgttg < 2:59607/100‑1 (MQ=255) tttCGCCCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCgttgttgagatcg > 2:981464/1‑94 (MQ=255) tCGACCCAGCCATAGAGCTTCCCGTATTGGGAGGACGACGGTATGGATGACATACTCATGGGTATTCCTCGGTTGTTGTGTTTGCGTTGTTGTTGTTAtt < 2:578353/100‑1 (MQ=255) | CCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGAACCTTGTTACCAATTCTTTCGACCCAGCCATAGAGCTTCCCGGATTGGGAGGACGACGGTATGGATGACATACTCATGGGCATTCCTCGGTTGTTGTGTTTGCGTTGTTGTTGTTATT > NC_000913/1401622‑1401814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |