| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,210,811 | C→T | pseudogene (1712/2001 nt) | yehQ → | pseudogene |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,210,811 | 0 | C | T | 97.7% | 147.6 / ‑4.2 | 45 | pseudogene (1712/2001 nt) | yehQ | pseudogene |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (22/21); total (23/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
CAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGG > NC_000913/2210716‑2210904 | cAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTa < 2:643627/100‑1 (MQ=255)cAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTa > 1:394029/1‑100 (MQ=255) gTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTAcc < 2:1135775/100‑1 (MQ=255) ttgttgAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTc < 2:1150972/100‑1 (MQ=255) gttgAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTg > 1:655627/1‑100 (MQ=255) gttgAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTg < 2:756995/100‑1 (MQ=255) tgAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGcc < 1:281013/100‑1 (MQ=255) tgAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGATGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGcc < 1:192175/100‑1 (MQ=255) aaGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAg > 2:25089/1‑100 (MQ=255) gggCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCg > 1:1213704/1‑100 (MQ=255) ggCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGt > 1:1129809/1‑100 (MQ=255) cAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGttt < 2:1009182/100‑1 (MQ=255) gACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCt > 2:790882/1‑100 (MQ=255) acacTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCtg > 1:617006/1‑100 (MQ=255) ggAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCg > 1:427832/1‑100 (MQ=255) aCCACGGGTGATGATGACAACAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCt < 2:490057/100‑1 (MQ=255) cACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTAc > 1:373869/1‑100 (MQ=255) gTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCtc > 2:643000/1‑100 (MQ=255) gTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCtc < 1:738422/100‑1 (MQ=255) atgatgaCAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCtcatc < 1:25089/100‑1 (MQ=255) tgatgaCAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCtcatca < 2:766797/100‑1 (MQ=255) gaCAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTg > 1:996110/1‑100 (MQ=255) aCAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGc < 1:704945/100‑1 (MQ=255) cAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTggt > 2:791639/1‑98 (MQ=255) aaaaCCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGa > 2:984024/1‑100 (MQ=255) aaCCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATa > 2:396048/1‑100 (MQ=255) aCCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATAc > 1:538427/1‑100 (MQ=255) cGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCt < 1:418125/100‑1 (MQ=255) gggCCTGGTCGCTGGACGCAGAAACTACGCCTGTGTCACGGCTACCTTCGGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCt < 1:1088175/97‑1 (MQ=255) ccTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCa > 1:50729/1‑100 (MQ=255) gggCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGc > 2:1014915/1‑100 (MQ=255) ggCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCg < 1:130889/100‑1 (MQ=255) ggCGCTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTACCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCg > 1:1274487/1‑100 (MQ=255) gcgcTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCg < 2:512694/99‑1 (MQ=255) gcTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTa < 1:886374/100‑1 (MQ=255) gcTGGACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTa < 1:643004/100‑1 (MQ=255) ggACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACtt > 1:963670/1‑100 (MQ=255) ggACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACtt > 1:966825/1‑100 (MQ=255) gACGCAGAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTa < 1:309565/100‑1 (MQ=255) gAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAAc > 2:159321/1‑100 (MQ=255) gAAACTACGCCTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAAc < 1:1286689/100‑1 (MQ=255) ccTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATa < 1:659854/100‑1 (MQ=255) ccTGTGGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATa > 2:1260751/1‑100 (MQ=255) gtgGCACTGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACg > 2:595033/1‑100 (MQ=255) tgGCAGTGCGACCTTCTGCCAGCGTTTTGCCTGTGCCGTCGACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACgg < 2:1101743/100‑1 (MQ=255) | CAGTTTTGTTGAAGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGGGCGCTGGACGCAGAAACTACGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACTGCTCATCAGTTGCTGATACGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGG > NC_000913/2210716‑2210904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |