Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,639,879 (T)8→7 100% intergenic (‑159/‑232) uspB ← / → uspA universal stress (ethanol tolerance) protein B/universal stress global response regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,639,8720T.94.9% 570.8 / 17.3 136intergenic (‑152/‑239)uspB/uspAuniversal stress (ethanol tolerance) protein B/universal stress global response regulator
Reads supporting (aligned to +/- strand):  ref base T (3/2);  new base . (67/62);  total (71/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01

Only 100 of 154 total aligned reads displayed.

CGCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCGGGTC  >  NC_000913/3639778‑3639967
                                                                                              |                                                                                               
cGCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttt                                                                                            <  1:1032981/100‑1 (MQ=255)
 gCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttttt                                                                                           <  2:1209809/100‑1 (MQ=255)
 gCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttttt                                                                                           <  2:1568271/100‑1 (MQ=255)
 gCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGttttttt                                                                                           <  2:117249/100‑1 (MQ=255)
 gCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCACTATAGATAGTGTAGGAGATCAGGTTGtttttt                                                                                            >  1:745154/1‑99 (MQ=255)
  cTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttttc                                                                                          <  1:1548523/100‑2 (MQ=255)
    gCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTTTTTTTTTTTTCATACGAGCGGCTCTACAGATAGTGTAGGAGATCAGGTTGttttttt                                                                                           >  1:606741/1‑97 (MQ=255)
    gCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttttcca                                                                                        <  1:3150854/100‑4 (MQ=255)
     ccAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGTTTTTTTTCCa                                                                                       <  2:3403427/100‑1 (MQ=255)
     ccAATCAGTTAACACCAGGTCCTGGAGAAACCGCGTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGtttttttccag                                                                                       <  1:352723/100‑5 (MQ=255)
       aaTCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGaa                                                                                    >  2:1043058/1‑100 (MQ=255)
         tCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAgg                                                                                  <  1:2915702/100‑1 (MQ=255)
           aGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGACAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGtt                                                                                >  2:620894/1‑100 (MQ=255)
            gTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCGACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGt                                                                                 <  1:1790684/98‑1 (MQ=255)
            gTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCATAAGCTTa                                                                               >  1:918078/1‑100 (MQ=255)
            gTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTa                                                                               >  2:1487749/1‑100 (MQ=255)
            gTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTa                                                                               <  1:1027139/100‑1 (MQ=255)
             ttAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTaa                                                                              <  1:3731771/100‑1 (MQ=255)
              tAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAc                                                                             >  2:215101/1‑100 (MQ=255)
              tAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAc                                                                             >  2:1084548/1‑100 (MQ=255)
               aaCACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAc                                                                             >  1:1237755/1‑99 (MQ=255)
               aaCACCAGGTCCTGGAGAAACCGCTTTTGGGGTGACGAACACACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAAcc                                                                            <  1:2372530/100‑1 (MQ=255)
                acacCAGGTCCTGGAGATACTGCTGTTGTGGTGACCGATTGAGTAGCTGTGCTATAGATAGTGTAGGAGATTAGGTTG‑TTTTTTTCCTGAAGGTTAAcc                                                                            <  1:671681/99‑1 (MQ=255)
                acacCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCa                                                                           <  2:848579/100‑1 (MQ=255)
                 cacCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCa                                                                           >  2:2161348/1‑100 (MQ=255)
                 cacCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCAc                                                                          >  2:1695437/1‑100 (MQ=255)
                   ccAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTa                                                                        >  2:893667/1‑100 (MQ=255)
                     aGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATc                                                                      <  2:1804039/100‑1 (MQ=255)
                      ggTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCa                                                                     >  1:3333258/1‑100 (MQ=255)
                       gTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGACCAGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTATCCACTAt                                                                       <  1:573119/97‑1 (MQ=255)
                        tCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAat                                                                   <  1:1188790/100‑1 (MQ=255)
                         ccTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAata                                                                  >  2:1550256/1‑100 (MQ=255)
                         ccTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAat                                                                   <  1:51369/99‑1 (MQ=255)
                           tGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatata                                                                <  1:50839/100‑1 (MQ=255)
                            ggAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAatatat                                                               >  1:2058581/1‑100 (MQ=255)
                             gagaAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATAtt                                                              >  2:102713/1‑100 (MQ=255)
                              agaAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTc                                                             <  1:1902943/100‑1 (MQ=255)
                               gaAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCa                                                            <  2:1228481/100‑1 (MQ=255)
                               gaAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TGTTTTTCCAGAAGGTTAACCACTATCAATATAtt                                                              >  1:2536257/1‑98 (MQ=255)
                               gaAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGGAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAATAACTATCAATATAtt                                                              >  1:2535144/1‑98 (MQ=255)
                                 aaCCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATg                                                          <  1:831647/100‑1 (MQ=255)
                                    cGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCg                                                       <  2:220/100‑1 (MQ=255)
                                      cTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaa                                                     <  2:3476060/100‑1 (MQ=255)
                                      cTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaa                                                     >  2:385617/1‑100 (MQ=255)
                                        tttGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGaaaa                                                   >  2:3294257/1‑100 (MQ=255)
                                           gtggtgACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAttt                                                >  2:3202623/1‑100 (MQ=255)
                                           gtggtgACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAAttt                                                >  2:3039029/1‑100 (MQ=255)
                                            tggtgACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTg                                               <  2:135888/100‑1 (MQ=255)
                                            tggtgACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTg                                               <  2:575463/100‑1 (MQ=255)
                                             ggtgACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGt                                              <  1:3178587/100‑1 (MQ=255)
                                              gtgACCAACATATGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGtt                                             <  1:715045/100‑1 (MQ=255)
                                              gtgACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGtt                                             <  2:2748617/100‑1 (MQ=255)
                                                gACCAACATACGAGCGGCACTATAGATAGTGTAGGAGATCAGGTT‑ATTTTTTTCCAGAAGGTTAACAAATAACAAAATATGCAGGTCGAACATTTGttt                                            >  1:2224647/1‑99 (MQ=255)
                                                 nccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTAt                                          >  2:3309225/2‑100 (MQ=255)
                                                 aCCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTAt                                          >  2:365803/1‑100 (MQ=255)
                                                  ccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         >  2:2287797/1‑100 (MQ=255)
                                                  ccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         >  2:2467202/1‑100 (MQ=255)
                                                  ccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         >  2:970216/1‑100 (MQ=255)
                                                  ccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         >  1:1918730/1‑100 (MQ=255)
                                                  ccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         >  1:3401613/1‑100 (MQ=255)
                                                  ccAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTT‑CTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         <  1:2434492/100‑1 (MQ=255)
                                                   cAACATAAGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATc                                         >  2:1982698/1‑99 (MQ=255)
                                                     aCATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTaa                                      <  2:3000940/100‑1 (MQ=255)
                                                      cATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAAc                                     <  1:3278839/100‑1 (MQ=255)
                                                       aTACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACg                                    <  1:3414262/100‑1 (MQ=255)
                                                        tACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGa                                   >  1:1185734/1‑100 (MQ=255)
                                                         aCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAg                                  <  1:1016015/100‑1 (MQ=255)
                                                         aCGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAg                                  <  1:2092249/100‑1 (MQ=255)
                                                               ggCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCa                            >  2:2037882/1‑100 (MQ=255)
                                                                gCTCTATAGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCaa                           >  2:767126/1‑100 (MQ=255)
                                                                    tataGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCg                       <  1:1112325/100‑1 (MQ=255)
                                                                    tataGATAGTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACAACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCg                       >  2:1870061/1‑100 (MQ=255)
                                                                     atagatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCgg                      <  2:788939/100‑1 (MQ=255)
                                                                     atagatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATATCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCgg                      >  2:43687/1‑100 (MQ=255)
                                                                      tagatagTGTAGGAGATCAGGTTGTTTTTTTT‑CTTAATTTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAg                          >  1:1091363/1‑95 (MQ=255)
                                                                      tagatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAATCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCg                       >  1:1100144/1‑98 (MQ=255)
                                                                       agatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGAt                    >  1:1997473/1‑100 (MQ=255)
                                                                        gatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGAtt                   >  2:2425214/1‑100 (MQ=255)
                                                                        gatagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGAtt                   >  1:785534/1‑100 (MQ=255)
                                                                         atagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTg                  <  2:2982872/100‑1 (MQ=255)
                                                                         atagTGTAGGAGATCAGGTTG‑TTTTTTGCGAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTg                  <  1:779920/100‑1 (MQ=255)
                                                                          tagTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGa                 >  1:1390764/1‑100 (MQ=255)
                                                                           agTGTAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGAc                <  1:1061700/100‑1 (MQ=255)
                                                                            gtgtAGGAGATCAGGTTGTTTTTTTT‑TTTTTTTTTTACCACTATCAATATATTCATGTCTTTTATTTGTTTATCTAACGAGTAAGCAAGGctgctt                   >  1:547180/1‑91 (MQ=255)
                                                                            gtgtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACg               <  1:1084543/100‑1 (MQ=255)
                                                                             tgtAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACg               <  1:2161339/100‑1 (MQ=255)
                                                                              gtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGTTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACg               >  1:1828109/1‑98 (MQ=255)
                                                                              gtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACgca             >  1:1828219/1‑98 (MQ=255)
                                                                              gtAGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGa             >  2:2777650/1‑100 (MQ=255)
                                                                                aGGAGATCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGatc           >  1:1368977/1‑100 (MQ=255)
                                                                                  gagaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGatcat         <  2:732206/100‑1 (MQ=255)
                                                                                  gagaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGatcat         <  2:564989/100‑1 (MQ=255)
                                                                                    gaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATcc       <  1:861593/100‑1 (MQ=255)
                                                                                    gaTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATcc       <  2:2900415/100‑1 (MQ=255)
                                                                                     aTCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCg      >  2:271636/1‑100 (MQ=255)
                                                                                      tCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCgg     >  2:2905232/1‑100 (MQ=255)
                                                                                      tCAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCgg     <  1:750978/100‑1 (MQ=255)
                                                                                       cAGGTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCggg    >  2:1333580/1‑100 (MQ=255)
                                                                                         ggTTG‑TTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCGGGTc  <  2:1701131/100‑1 (MQ=255)
                                                                                           ttgttTTTTTT‑CAGAAAGTTAACCACTATCAATAAAGTCAAGGGGAAAATTTGGTTATGTAACGAGTGAGCCAGGCTGTTTGTCgg              >  1:2869775/1‑86 (MQ=255)
                                                                                              |                                                                                               
CGCTGCCAATCAGTTAACACCAGGTCCTGGAGAAACCGCTTTTGTGGTGACCAACATACGAGCGGCTCTATAGATAGTGTAGGAGATCAGGTTGTTTTTTTTCCAGAAGGTTAACCACTATCAATATATTCATGTCGAAAATTTGTTTATCTAACGAGTAAGCAAGGCGGATTGACGGATCATCCGGGTC  >  NC_000913/3639778‑3639967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑