| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,866,592:1 | +C | 100% | coding (960/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,866,588 | 1 | . | C | 94.7% | 454.8 / 16.5 | 133 | coding (964/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| Reads supporting (aligned to +/- strand): ref base . (2/5); new base C (70/56); total (72/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 142 total aligned reads displayed.
CATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑C‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACA > NC_000913/2866489‑2866682 | naTCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAg > 2:3027992/2‑100 (MQ=255)cATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAg > 2:1527358/1‑100 (MQ=255) ggACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCACGGAACAGCGCTTCGCTATTCAG‑c‑c‑cc > 2:1530507/1‑100 (MQ=255) gACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑ccc < 2:3333545/100‑2 (MQ=255) ccTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑ccctg < 2:2944995/100‑4 (MQ=255) cTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑ccctgc > 2:549758/1‑96 (MQ=255) ttttATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑ccctgcg < 2:2241258/100‑6 (MQ=255) tATTGTGCACAGAAAAGGCTAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGttt > 2:1610151/1‑100 (MQ=255) ttctgCACAGAAAAGGCCAGCCTGCCTTGAGACTGGCCTTTCTGACACATGCTTACTTACTCGCGGAACAGCTCTTCGATATTCAGCC‑C‑CCTGCGttt < 1:2924638/95‑1 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAg < 2:3401524/100‑1 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAg < 1:1498824/100‑1 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAg > 2:2720939/1‑100 (MQ=255) tgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAgg > 1:349384/1‑100 (MQ=255) tgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAgg < 2:1781788/100‑1 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGTCCTTTCTGACAGATGCTTACTTACTCGCGGAACCGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGTAGGa < 1:248517/100‑1 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGa > 2:928636/1‑100 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGa > 2:3521224/1‑100 (MQ=255) cacaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGAt > 2:1343230/1‑100 (MQ=255) cacaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGAt > 1:2098016/1‑100 (MQ=255) cacaGAAAAGGCCAGCCTCGCTTGAGACTGACCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGAt > 1:2499894/1‑100 (MQ=255) caGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGAttt > 1:3286398/1‑100 (MQ=255) aGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTc > 1:2006999/1‑100 (MQ=255) aaaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTcgc < 2:2485810/100‑1 (MQ=255) aaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTcgcg < 2:282767/100‑1 (MQ=255) aaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTcgcg < 1:3274155/100‑1 (MQ=255) aaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCgcgc < 2:1526658/100‑1 (MQ=255) ggCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCaa > 2:655551/1‑100 (MQ=255) ggCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCACGATTTCGCGCaa > 1:1881153/1‑100 (MQ=255) ggCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGATTCGATATTCCGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCaa > 1:3624062/1‑100 (MQ=255) ccAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAAc > 1:2606293/1‑100 (MQ=255) gCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGgc > 2:2827238/1‑100 (MQ=255) cTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGgcgc < 1:355025/100‑1 (MQ=255) tCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa > 1:855360/1‑100 (MQ=255) tCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa < 2:924341/100‑1 (MQ=255) tCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑C‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAg < 1:2154051/100‑1 (MQ=255) tCGCGTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa < 1:1002386/100‑1 (MQ=255) gCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAgg < 2:1918564/100‑1 (MQ=255) ttGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGcc < 1:2993013/100‑1 (MQ=255) tGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCt > 1:495844/1‑100 (MQ=255) gagaCTGGCCTTTCTGACAGATGCTTACTTGCTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCtt < 1:667077/100‑1 (MQ=255) agaCTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTc > 2:3447626/1‑100 (MQ=255) cTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAc < 2:2549879/100‑1 (MQ=255) cTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAc < 1:3447600/100‑1 (MQ=255) tGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAcc < 1:1410697/100‑1 (MQ=255) tGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAcc > 1:1683666/1‑100 (MQ=255) ggCCTTTCTGACAGATGCTTACTTGCTCGCGGAACAGCGCTTCGATATTCAG‑C‑CACGTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAcc < 1:1135550/99‑1 (MQ=255) ggCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCt > 1:1477351/1‑100 (MQ=255) ggCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCt > 1:623430/1‑100 (MQ=255) ggCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCt > 2:2403249/1‑100 (MQ=255) gCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTg > 2:604356/1‑100 (MQ=255) ccTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGa > 2:2834567/1‑100 (MQ=255) ccTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGa < 2:753851/100‑1 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa > 2:2429905/1‑100 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa < 2:1056924/100‑1 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa > 1:621381/1‑100 (MQ=255) tGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTgg > 1:228107/1‑100 (MQ=255) tGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTgg < 1:3098618/100‑1 (MQ=255) gACAGATGCTTACTTACTCGCGTAACAGCGCGTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc < 1:3786726/100‑1 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc > 2:3538773/1‑100 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc > 2:3375991/1‑100 (MQ=255) cAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGa < 1:3587058/100‑1 (MQ=255) cAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGa > 2:2294267/1‑100 (MQ=255) aGATGCTTATTTACTTGTGGAACAGCGTTTCGTTATTCAG‑CTC‑CCTTCGTTTGCAGGATTTCGCTCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGaa < 1:1547589/100‑1 (MQ=255) gATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAac < 2:1090965/100‑1 (MQ=255) gATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAac < 1:3282174/100‑1 (MQ=255) aTGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAaca < 1:1108064/100‑1 (MQ=255) aTGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAaca < 1:1900968/100‑1 (MQ=255) aTGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAaca > 1:3645020/1‑100 (MQ=255) aTGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAaca > 1:3648996/1‑100 (MQ=255) tGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAacac < 2:235163/100‑1 (MQ=255) tGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAacac > 2:1134952/1‑100 (MQ=255) gCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACg > 2:1084957/1‑100 (MQ=255) cttacttaCTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGt > 2:1324750/1‑100 (MQ=255) cttacttaCTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGt > 2:2902651/1‑100 (MQ=255) attacttacTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTCCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGt > 1:159655/2‑100 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg < 2:1979514/100‑1 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg < 1:479762/100‑1 (MQ=255) ctCGCGGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGt > 1:130719/1‑100 (MQ=255) cgGAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAgg < 2:2680455/100‑1 (MQ=255) ggAACAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGc > 1:3653912/1‑100 (MQ=255) aaCAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCACAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCa < 1:876044/100‑1 (MQ=255) aCAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCaa > 2:568001/1‑100 (MQ=255) cAGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAt > 2:421651/1‑100 (MQ=255) aGCGCTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAtt < 2:159655/100‑1 (MQ=255) gcgcTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt > 1:3785039/1‑100 (MQ=255) cgcTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCACTTTc > 1:926706/1‑100 (MQ=255) gcTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCa < 2:825838/100‑1 (MQ=255) gcTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCa < 2:168242/100‑1 (MQ=255) cTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 2:3710103/100‑1 (MQ=255) cTTCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 1:1860053/100‑1 (MQ=255) ttCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAAACTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc < 1:2786733/99‑1 (MQ=255) tCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGa < 2:3486773/100‑1 (MQ=255) tCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGa > 1:1497152/1‑100 (MQ=255) tCGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGa > 2:3120232/1‑100 (MQ=255) cGATATTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCTCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAc < 1:2432352/100‑1 (MQ=255) atatTCAG‑C‑CACCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCTTTCAACATGAATCTGGCGAAGACGTTCACGGGTGAAGACAATTTCACGACCt > 1:3013868/1‑100 (MQ=255) tatTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTa < 1:1563714/100‑1 (MQ=255) tatTCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTa < 2:3286422/100‑1 (MQ=255) ttCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACa > 2:3735005/1‑100 (MQ=255) ttCAGCC‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACa > 2:1935676/1‑100 (MQ=255) | CATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑C‑C‑CCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACA > NC_000913/2866489‑2866682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |