Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,951,598:1 +T 100% pseudogene (57/663 nt) ilvG → pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,951,5971.T92.9% 533.3 / 33.0 170pseudogene (56/663 nt)ilvGpseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted
Reads supporting (aligned to +/- strand):  ref base . (5/7);  new base T (68/88);  total (73/97)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 186 total aligned reads displayed.

TTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCAC  >  NC_000913/3951498‑3951691
                                                                                                     |                                                                                               
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTGCTGGCGTTACGACCa                                                                                                  >  1:1815775/1‑100 (MQ=255)
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCa                                                                                                  >  1:1856187/1‑100 (MQ=255)
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCACCAACACTGCGCGCAGCTGCCTGATGACCATTCCTGGCGTTACGACCa                                                                                                  >  1:644399/1‑100 (MQ=255)
  tAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAtt                                                                                               <  2:2420292/100‑2 (MQ=255)
  tAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAtt                                                                                               >  2:1825841/1‑99 (MQ=255)
   aaaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGTCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAttc                                                                                              <  1:1480454/100‑3 (MQ=255)
    aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATtcc                                                                                            <  1:3570466/100‑1 (MQ=255)
    aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATtcc                                                                                            <  2:2738742/100‑1 (MQ=255)
    aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGAGTGATGAACATTCCTAGCGTTACGACCAtt                                                                                               <  1:173397/98‑2 (MQ=255)
      tGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAttcccg                                                                                           >  2:1367857/1‑95 (MQ=255)
       gCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCgg                                                                                          <  2:2332509/100‑1 (MQ=255)
         tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTg                                                                                        >  2:3786576/1‑100 (MQ=255)
         tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGCCGTTACGACGAttcccg                                                                                           >  1:1287917/1‑92 (MQ=255)
           tGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGAc                                                                                      >  2:167025/1‑100 (MQ=255)
            gTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACg                                                                                     >  2:1324958/1‑100 (MQ=255)
            gTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACg                                                                                     >  1:589656/1‑100 (MQ=255)
               aCCTGCATTACAGCAGCCGTTAAATCAATGACTCGCAGCAACACTGCGCTCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCt                                                                                   <  1:3196556/99‑1 (MQ=255)
               aCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTa                                                                                  <  2:304652/100‑1 (MQ=255)
                ccAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCt                                                                                   >  1:2443571/1‑98 (MQ=255)
                ccAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTAt                                                                                 >  1:2724702/1‑100 (MQ=255)
                 cAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATc                                                                                >  1:1569915/1‑100 (MQ=255)
                 cAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATc                                                                                <  2:1447125/100‑1 (MQ=255)
                  aGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCt                                                                               <  2:3386916/100‑1 (MQ=255)
                   gCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTa                                                                              <  2:342493/100‑1 (MQ=255)
                   gCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTa                                                                              <  1:1293947/100‑1 (MQ=255)
                        aCAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACgcgc                                                                         >  1:3075611/1‑100 (MQ=255)
                        aCAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACgcgc                                                                         >  1:1156305/1‑100 (MQ=255)
                             agcCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCgttg                                                                    <  1:1346398/100‑1 (MQ=255)
                              gcCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCgttgt                                                                   >  2:1581073/1‑100 (MQ=255)
                                cggtAAATCAATGACTCGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCgttgttg                                                                 <  1:3410879/97‑1 (MQ=255)
                                cGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCgttgttg                                                                 <  2:1051082/100‑1 (MQ=255)
                                cGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCgttgttg                                                                 >  2:3345364/1‑100 (MQ=255)
                                cGTTAAATCAATGACTGGCAACAACACTGCGCGGAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTGCCAGTGACGCTATCTACGCGCCgttgtt                                                                  >  1:669386/1‑99 (MQ=255)
                                 gTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCgttgttgt                                                                <  2:3291265/100‑1 (MQ=255)
                                 gTTAAATCAAGGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTTCGACCATTCCCGGTGACGCTATCTACGCGCCgttgttg                                                                 <  1:2335018/99‑1 (MQ=255)
                                      aTCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaaa                                                           >  1:690691/1‑100 (MQ=255)
                                      aTCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCGACGCGCCGTTGTTGTTaaaa                                                           <  1:2319516/100‑1 (MQ=255)
                                       tCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaac                                                          <  2:3683100/100‑1 (MQ=255)
                                        cAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca                                                         <  1:2287083/100‑1 (MQ=255)
                                        cAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca                                                         >  2:2682403/1‑100 (MQ=255)
                                         aaTGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca                                                         <  1:892044/99‑1 (MQ=255)
                                           tGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACt                                                      <  1:3224755/100‑1 (MQ=255)
                                            gACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTg                                                     <  1:3754921/100‑1 (MQ=255)
                                             aCTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGt                                                    >  1:3294348/1‑100 (MQ=255)
                                               tGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg                                                  <  2:129240/100‑1 (MQ=255)
                                                ggCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCgg                                                 >  1:602519/1‑100 (MQ=255)
                                                ggCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCgg                                                 >  2:2897647/1‑100 (MQ=255)
                                                ggCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCgg                                                 <  1:2568505/100‑1 (MQ=255)
                                                 gcagcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGa                                                <  2:398145/100‑1 (MQ=255)
                                                  cagcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGAt                                               >  1:3742964/1‑100 (MQ=255)
                                                  cagcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGAt                                               >  1:1457222/1‑100 (MQ=255)
                                                   agcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATc                                              >  1:2014866/1‑100 (MQ=255)
                                                    gaagcacTGCGCGCGGCTGCTTGATCAACATTCCTGTCCATACGTCCAATCCCGCGGGCGCCATCGCCGCGCCGTTGTTGTTAAAACAACGGGCgg                                                 <  1:1662044/92‑1 (MQ=255)
                                                     caACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGt                                            >  2:2013176/1‑100 (MQ=255)
                                                       acacTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaa                                          <  2:2656718/100‑1 (MQ=255)
                                                        cacTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaaa                                         <  2:916038/100‑1 (MQ=255)
                                                        aacTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTAAGACCATTCCCGGTGACGCTATCTACGCGCAGTTGTTGTTAAAACAACTGTCGGATCGTaaa                                         >  1:2674309/2‑100 (MQ=255)
                                                         acTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAAc                                        >  1:3059202/1‑100 (MQ=255)
                                                              gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTACACCTGCg                                   >  1:2857790/1‑100 (MQ=255)
                                                              gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg                                   >  2:599303/1‑100 (MQ=255)
                                                              gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg                                   <  1:1344429/100‑1 (MQ=255)
                                                              cgatctcTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg                                   <  1:1120396/94‑1 (MQ=255)
                                                               cgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCgg                                  >  2:1404201/1‑100 (MQ=255)
                                                                gcAGCTGCGTGATGAACAGTCCTGGCGTTACGACCATTCCCGGGGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGa                                 <  2:3545725/100‑1 (MQ=255)
                                                                    cTGCGTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGGCGGATCGTAAACCTGCgagatcg                             >  2:1120401/1‑94 (MQ=255)
                                                                    cTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcg                            <  2:1583799/100‑1 (MQ=255)
                                                                        gTGATGAACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcgtcg                         <  1:3780604/100‑1 (MQ=255)
                                                                         tgatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAACACAACTGTCGGATCGTAAACCTGc                                    >  1:3500772/1‑88 (MQ=255)
                                                                         tgatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcgtcgt                        <  2:3758414/100‑1 (MQ=255)
                                                                          gatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcgtcgt                        >  2:70216/1‑99 (MQ=255)
                                                                          gatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg                       <  1:3763443/100‑1 (MQ=255)
                                                                          gatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg                       >  1:780907/1‑100 (MQ=255)
                                                                          gatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg                       <  2:296438/100‑1 (MQ=255)
                                                                          gatgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg                       <  2:3107083/100‑1 (MQ=255)
                                                                            tgaACATTCCTGTCGTTACGATCATGCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGa                      <  1:1224645/99‑1 (MQ=255)
                                                                            tgaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAc                     >  2:3485201/1‑100 (MQ=255)
                                                                             gaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAcc                    <  2:473264/100‑1 (MQ=255)
                                                                             gaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAcc                    <  2:3622446/100‑1 (MQ=255)
                                                                             gaACATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAcc                    <  1:1582780/100‑1 (MQ=255)
                                                                              aaCATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACca                   >  2:71654/1‑100 (MQ=255)
                                                                              aaCATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACca                   >  1:1705141/1‑100 (MQ=255)
                                                                               aCATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcac                  >  2:1976349/1‑100 (MQ=255)
                                                                               aCATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcaca                 <  1:10143/100‑1 (MQ=255)
                                                                                cATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcaca                 <  1:2885890/100‑1 (MQ=255)
                                                                                cATTCCTGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcaca                 <  2:1856194/100‑1 (MQ=255)
                                                                                cATTCCTGGCGTTACGACCATTCCCGGCGACGCTAACTACGCCCCGTTGTTGTTAAAACAACTGCCGGATCGTAATCCTGCGGATTGCGTCGTGACcaca                 <  1:761619/100‑1 (MQ=255)
                                                                                      tGGCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGAtgtg           <  1:3708261/100‑1 (MQ=255)
                                                                                       ggCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTgg          >  1:815203/1‑100 (MQ=255)
                                                                                        gCGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTggg         <  1:3115693/100‑1 (MQ=255)
                                                                                         cGTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTgggg        >  1:1038140/1‑100 (MQ=255)
                                                                                          gTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgc       <  2:3706236/100‑1 (MQ=255)
                                                                                          gTTACGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgc       <  2:3266409/100‑1 (MQ=255)
                                                                                             aCGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCTGATTGCGTCGTGACCACCGATGTGGGgcagc    <  2:2562327/100‑1 (MQ=255)
                                                                                             aCGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagc    <  2:319628/100‑1 (MQ=255)
                                                                                              cGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCTTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagca   >  2:3575302/1‑100 (MQ=255)
                                                                                              cGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGCTGTGGGgcagc    >  1:2071198/1‑99 (MQ=255)
                                                                                              cGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagca   <  2:2633487/100‑1 (MQ=255)
                                                                                              cGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagca   >  2:973945/1‑100 (MQ=255)
                                                                                              cGACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCATGACCACAGATGTGGGgcagca   <  1:2929960/100‑1 (MQ=255)
                                                                                               gACCATTCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagcan  <  1:3345339/100‑2 (MQ=255)
                                                                                                     |                                                                                               
TTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCAC  >  NC_000913/3951498‑3951691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: