New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2950598 =	NA (NA)	15 (0.120)	9/158	NT	NA	intergenic (+25/+37)	argA/recD	amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain
	?	NC_000913	2950615 =	NA (NA)					noncoding (3/14 nt)	REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences

CAATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATgtcgcatccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2950696‑2950598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCAT  >  NC_000913/2950615‑2950723                                                                                                                                                                                                                  CAATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATG                                                                                                              >  2:1369730/1‑100   ATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTC                                                                                                            >  1:768756/1‑100    gCGCCACTCGTACTTAGCGGCGCAGTGGTCTGGCGGCGTTGGTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCG                                                                                                           >  1:3222590/2‑100     CGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGC                                                                                                          >  2:2642392/1‑100     CGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGC                                                                                                          >  2:179058/1‑100      GCCACTCGTACTGAGCGGCGCCGTGGTCTGGCGCCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGCCGTACGAGCGCTACGCATGTCGC                                                                                                          >  1:716427/1‑99      GCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCA                                                                                                         >  2:3641505/1‑100      GCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCA                                                                                                         >  2:1969280/1‑100         ACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCC                                                                                                      <  2:1832515/100‑1         ACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCC                                                                                                      <  1:575001/100‑1         ACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCC                                                                                                      <  2:2452543/100‑1                                            GTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACACATGTCGCATCCGACAATTACGTTTATTCCCGTGAACTAAACAACGC                                                                   >  1:1642110/1‑100                                                    CACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAC                                                           >  2:2456977/1‑100                                                    CACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAC                                                           >  1:91509/1‑100                                                              AACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGACGATTACGTTTATTCCCGTGAACTAAACAACGATGCCAGACCACTGAGC                                                   >  1:952743/1‑98                                                                     TTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTA                                          >  2:674862/1‑100                                                                        CCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGA                                       >  2:2280549/1‑100                                                                        CCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTA                                          >  1:862326/1‑97                                                                         CGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAG                                      >  2:1005781/1‑100                                                                         CGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGA                                       >  1:2853755/1‑99                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                     >  2:865952/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                     >  2:3347227/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                     >  1:3716719/1‑100                                                                             TGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGC                                  >  1:1707836/1‑100                                                                             TGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGC                                  >  2:3222888/1‑100                                                                               CGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGA                                >  1:3143248/1‑100                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCGGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT           <  1:2259955/100‑1                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT           <  1:3267307/100‑1                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT           <  1:1814627/100‑1                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT           >  1:2047571/1‑100                                                                                                     TCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTC          >  2:2332986/1‑100                                                                                                        nATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATC       >  1:3028124/2‑100                                                                                                        CATCCGGCAATTACGTTTATTCCCGTGAAGTAAACAACGCCGCCAGACGACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATC       <  1:1073340/100‑1                                                                                                        CATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATC       >  2:2543351/1‑100                                                                                                        CATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATC       >  1:566095/1‑100                                                                                                        CATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATC       >  1:2730145/1‑100                                                                                                         ATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCG      <  2:3588493/100‑1                                                                                                           CCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGn    <  1:3737310/100‑2                                                                                                           CCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGC    <  2:407256/100‑1                                                                                                           CCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGG     <  1:278563/99‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA   <  2:2627438/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA   <  2:2899065/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA   >  1:2946078/1‑100                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA   <  2:3616867/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA   <  2:575004/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA   >  1:456932/1‑100                                                                                                             GGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCAT  <  1:1627066/100‑1                                                                                                             GGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCAT  <  1:1161830/100‑1                                                                                                                                                                                                                  CAATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATgtcgcatccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2950696‑2950598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCAT  >  NC_000913/2950615‑2950723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.