New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4162241119 (0.850)21 (0.170) 7/160 NT 15.8% coding (1030/1101 nt) trmA tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase
?NC_000913 = 4162253 117 (0.940)coding (1018/1101 nt) trmA tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase

ATTATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4162136‑4162241
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagacgCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATGCCG  <  NC_000913/4162253‑4162159
                                                                                                                                                                                                           
ATTATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGC                                                                                                       >  2:2143205/1‑100
 TTATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCC                                                                                                      <  1:1196627/100‑1
   ATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCGATATGGTGCGTGTAGGGCAACTGAGACAACC‑‑GAGCCAG                                                                                                    >  1:3362471/1‑100
   ATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCCTATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAG                                                                                                    <  1:2020671/100‑1
   ATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAG                                                                                                    <  2:1197908/100‑1
   ATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAG                                                                                                    <  1:2021116/100‑1
   ATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAG                                                                                                    <  1:2253422/100‑1
    TGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGA                                                                                                   >  2:555856/1‑100
     GCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGAC                                                                                                  >  2:668479/1‑100
     GCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGAC                                                                                                  >  2:3504806/1‑100
     GCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGAC                                                                                                  >  2:3086863/1‑100
      CCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACG                                                                                                 >  1:2243158/1‑100
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGACCTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:1174801/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:1840247/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:64905/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:3760340/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:1497711/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:31389/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  1:50134/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:2309628/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  2:1447672/100‑1
                          CATGGGTTTTACTTCGCGGTCAGTAACACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGC                                                                             <  1:1435575/100‑1
                           ATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCT                                                                            <  2:2440795/100‑1
                            TGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTC                                                                           <  1:1816788/100‑1
                            TGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTC                                                                           <  2:2623044/100‑1
                            TGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTC                                                                           <  1:1593637/100‑1
                             GGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTTTGGCTCT                                                                          <  1:3630000/100‑1
                             GGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTCT                                                                          <  1:243593/100‑1
                             GGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTCT                                                                          <  2:1453936/100‑1
                              GGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTCTG                                                                         <  2:2596245/100‑1
                                     CTTCGCGGTCAGTAATACGCCACACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATC                                                                  <  1:2518939/100‑1
                                      TTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATCA                                                                 <  1:834469/100‑1
                                       TCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACATTAAGCCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATC                                                                  <  1:1127802/100‑1
                                                                                                   AGCCAGAAGCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCAT      >  2:1989826/1‑100
                                                                                                    GCCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATG     >  1:3523571/1‑100
                                                                                                    GCCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATG     >  1:2888109/1‑100
                                                                                                     CCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATGC    >  1:474410/1‑100
                                                                                                     CCAGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATG     <  1:1386979/99‑1
                                                                                                     CCAGACGCACAAGGTCGAACGTCTGGCTCGGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATG     <  1:1244897/99‑1
                                                                                                       AGACGCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATGCCG  <  2:3209790/100‑1
                                                                                                                                                                                                           
ATTATGCCGGATGCTGGCGCATCCGGCATGGGTTTTACTTCGCGGTCAGTAATACGCCGCACTCCATATGGTGCGTGTAGGGGAACTGATCAAACA‑‑GAGCCAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4162136‑4162241
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccagacgCACAAGGTCGAACGTCTGGCTCTGTTTGATCAGTTCCCCTACACGCACCATATGGAGTGCGGCGTATTACTGACCGCGAAGTAAAACCCATGCCG  <  NC_000913/4162253‑4162159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.