New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 173588	NA (NA)	11 (0.090)	7/164	NT	NA	noncoding (85/85 nt)	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	2443819 =	NA (NA)					noncoding (31/80 nt)	REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences

GCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/173484‑173588 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAC  >  NC_000913/2443819‑2443915                                                                                                                                                                                                            GCGTTTACGCAACAACGGATGCCCGGTGCGACGCTGGCGCGTCTTATCGGGCCTACACACGGACCCGAATCGTAGGTCGGATAAGGCGTTGACGCCGCAT                                                                                                        >  1:2075364/1‑100  CGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATC                                                                                                       >  1:1853093/1‑100   GTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCC                                                                                                      >  2:1544697/1‑100    TTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCG                                                                                                     >  2:2164210/1‑100    TTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCG                                                                                                     >  1:2862096/1‑100     TTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGA                                                                                                    <  2:2800306/100‑1      TACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                                                                   >  2:3770787/1‑100      TACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                                                                   >  1:995081/1‑100      TACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                                                                   <  1:1523334/100‑1         GCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                                                                   <  1:258016/97‑1          CGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATGCGGCGTGAACGCCTTATCCGACCTAC                                                                                               <  2:966737/100‑1                                                                     caCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGA                                    >  2:151466/3‑100                                                                     caCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAG                                     >  2:2842035/3‑99                                                                        GTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCCTACGTGTGACGGGTAGGCCTGATAAGACGCGATAAGCATCGCATCAGGCATGCTGCTCCAGAC                                   >  1:76654/1‑98                                                                        GTAGGTCGGATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGC                                 >  1:2266355/1‑100                                                                           GGTCGGATAAGGCGTTCACGCCGCATCCGGCCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGC                              >  2:110807/1‑100                                                                            GTCGGATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCA                             >  1:2846819/1‑100                                                                              CGGATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAAC                           >  2:99091/1‑100                                                                               GGATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACT                          >  1:1689838/1‑100                                                                                GATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTT                         >  1:830786/1‑100                                                                                GATAAGGCGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTT                         >  1:1791558/1‑100                                                                                       CGTTCACGCCGCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTG                  <  2:2266365/100‑1                                                                                                   ATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTG      <  2:1248873/100‑1                                                                                                   ATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTG      <  1:3518935/100‑1                                                                                                      CGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAA   <  2:1276013/100‑1                                                                                                       GACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAC  <  2:2591932/100‑1                                                                                                       GACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAC  >  2:3090929/1‑100                                                                                                                                                                                                            GCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/173484‑173588 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAC  >  NC_000913/2443819‑2443915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.