| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1972772 = | 122 (0.880) | 18 (0.140) | 10/160 | NT | 15.2% | intergenic (‑81/+64) | tar/cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| ? | NC_000913 | 1972820 = | 91 (0.730) | intergenic (‑129/+16) | tar/cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein | |||||
AAGAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1972879‑1972772‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaattGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATCAACA > NC_000913/1972820‑1972918 AAGAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTA < 2:1725933/100‑1AAGAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTA > 1:997619/1‑100AAGAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCAGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTA > 1:119965/1‑100 AGAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTAT < 2:3036504/100‑1 GAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATT < 1:3227942/100‑1 GAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATT < 2:579735/100‑1 GAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATT < 1:3001946/100‑1 GAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATT > 2:3371317/1‑100 AGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTT < 2:3620529/100‑1 AGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTT > 1:1972871/1‑100 AGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTT < 2:2720952/100‑1 AGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCATAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTT < 1:2561560/100‑1 GATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTC > 1:3397629/1‑100 GATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTT < 1:1011105/99‑1 ATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCA < 2:2803519/100‑1 TGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGTTCTGCGCATCGGGTTTTTTATTTCAA < 2:2313478/100‑1 TGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAA > 2:2056722/1‑100 TGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCA > 1:2175026/1‑99 TGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCCCATCGGGTTTTTTATTTC > 1:828052/1‑98 GGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAAT < 1:2744988/100‑1 GGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAAT > 2:1820513/1‑100 GCGCTGTTAGATAGCGCGGCGTCAGAAGTGGGGTTGTTCTGCCGATTTCCTCAGTTGAAATGAGCCAGATGATCTGCGCATCGGGTTTTTTATTTCAA < 1:3695442/98‑1 GCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATT < 1:1195402/100‑1 TCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGGTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAAC > 2:3418498/1‑100 CCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGACATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAAC > 2:2381551/1‑99 CCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACA > 1:1322748/1‑100 CTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAG > 2:2751534/1‑100 CTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAG > 2:1998325/1‑100 TCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGC > 2:1413524/1‑100 TCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGC > 1:3050916/1‑100 TGAAATGAACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTC > 2:2152642/1‑100 GAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATC > 1:2704706/1‑100 GAAATGAACCCGAGGATCTGCGCATCGGG‑‑‑TTAATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCT > 2:2558706/1‑100 TGAACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGC > 2:1030509/1‑100 GAACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCT > 2:2882534/1‑100 GAACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCT > 2:781105/1‑100 ACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGC > 2:1938080/1‑100 ACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGT > 2:3278693/1‑100 ACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCACCTCTTCGCTGT > 1:1916050/1‑100 ACCCGATGATCTGCGCATCGGG‑‑‑TTCATTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCACCATCTCTTCGCTGT > 2:2024559/1‑100 CCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTGAGGAAATCGGGGGAATTACGCCACTTCTGACGCCACGCTATCTAACAGCGCCATCTCTTCGCT > 2:2898640/1‑100 TTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGA > 2:2950023/1‑100 TTTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAG > 1:1837853/1‑99 TTCAATTGAGGAAATCGGGAGAATTACGTTACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAG < 1:67742/98‑1 TTCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAA < 2:2485453/100‑1 TCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAAT > 1:674943/1‑100 TCAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAAT > 2:2076498/1‑100 CAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATC < 1:2525273/100‑1 CAATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATC > 1:2523104/1‑100 AATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATCA < 1:2070507/100‑1 ATTGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATCAA < 2:1090550/100‑1 TGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGCTCACCAGTTTTTCGATGTTCCCCAGAATCAACA > 1:3001470/1‑100 AAGAGATGGCGCTGTTAGATAGCGCGGCGTCAGAAGTGGCGTAATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1972879‑1972772‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaattGAGGAAATCGGGAGAATTACGCCACTTCTGACGCCGCGCTATCTAACAGCGCCATCTCTTCGCTGTTCAGCAGTTTTTCGATGTTCACCAGAATCAACA > NC_000913/1972820‑1972918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |