New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3217490NA (NA)9 (0.070) 5/164 NT NA noncoding (57/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3217522 NA (NA)noncoding (89/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 214 total aligned reads displayed.

CAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCG  >  NC_000913/3217391‑3217588
                                                                                                   |                                                                                                  
 aaCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGg                                                                                                   <  2:3503207‑M1/100‑2 (MQ=255)
 aaCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGg                                                                                                   >  2:2975386‑M1/1‑99 (MQ=255)
  aCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgc                                                                                                  <  1:2686710‑M1/100‑3 (MQ=255)
  aCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgc                                                                                                  >  1:2824644‑M1/1‑98 (MQ=255)
  aCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgc                                                                                                  >  2:2136347‑M1/1‑98 (MQ=255)
       aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgat                                                                                             <  2:834972‑M1/100‑8 (MQ=255)
        ttAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCTGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                                                                            <  1:2401578/100‑1 (MQ=255)
        ttAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgat                                                                                             <  2:2063494‑M1/99‑8 (MQ=255)
         tAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATaa                                                                                           <  2:358334/100‑1 (MQ=255)
         tAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCCCTACACACCCCGCAGGCCTGATaa                                                                                           >  1:3456562/1‑100 (MQ=255)
          aaTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAg                                                                                          >  1:3130506/1‑100 (MQ=255)
           aTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCACACGCCTGATAAg                                                                                          >  2:312653/1‑99 (MQ=255)
             cgccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGAt                                                                                        <  2:198477/99‑1 (MQ=255)
             cgccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATg                                                                                       >  1:2545158/1‑100 (MQ=255)
              gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgc                                                                                      >  1:111069/1‑100 (MQ=255)
              gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgc                                                                                      >  2:514636/1‑100 (MQ=255)
              gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACAACCCGCAGgcctcatacgatgc                                                                                      >  1:2986719‑M1/1‑86 (MQ=255)
               ccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgcg                                                                                     >  2:1216429/1‑100 (MQ=255)
                  cATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCa                                                                                  >  1:774533/1‑100 (MQ=255)
                   aTCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAg                                                                                 <  2:3650363/100‑1 (MQ=255)
                    tcagCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCCACCCACCCCGCAACCCCGATAAgctcc                                                                                      >  1:3168725/4‑90 (MQ=18)
                    tCCGCCAGTGGCGCGGTGCAATTGCCGCAGGTGTGGCCTGACGCGCGTTAACCAGCCTACGCCCGCTGCACACCCCGTAGGCCTGATAAGATGCGCCan                                                                                 <  1:2423220/99‑2 (MQ=21)
                      cGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcat                                                                              >  2:2162766/1‑100 (MQ=255)
                         cAGTGGCGCGGTGCAATTGCCGGATGCGTCGCTTGTCGAGCCTGATCCGGCCGACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcatcgc                                                                           <  1:1334435/100‑1 (MQ=37)
                          aggggCGCGGTGCAATTGCCGGATGCGACGCGTGACGCGCCTTATCAGGCCTACACCAGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcatcgc                                                                           <  1:2061799/96‑1 (MQ=38)
                            tGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATC                                                                        >  2:1860365‑M2/1‑100 (MQ=255)
                             ggCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCA                                                                       >  2:1886800‑M2/1‑100 (MQ=255)
                               cgcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGG                                                                     >  2:3157080‑M2/1‑100 (MQ=255)
                                gcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgatgcgatgctggcgcatcttatcaggc                                                                    <  2:1694905‑M1/100‑33 (MQ=255)
                                gcgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgatgcgatgctggcgcatcttatcaggc                                                                    <  2:3334294‑M1/100‑33 (MQ=255)
                                  ggTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGgcctgatgcgatgctggcgcatcttatcaggcc                                                                   <  1:982802‑M1/99‑34 (MQ=255)
                                  ggTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAt                                                                  >  1:972419/1‑100 (MQ=255)
                                    tGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATtg                                                                >  2:503919/1‑100 (MQ=255)
                                       aaaggcgggttGCGACGCTAGACGCGCCTTCTACGGCCTACACCCGGTACACACCCCGCAGGCGTGATACGATGCGCCAGGATCGCATCAGGTATTGTGc                                                             <  1:999995/90‑1 (MQ=255)
                                       aaTTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGc                                                             >  2:2659127/1‑100 (MQ=255)
                                          ggccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                                          >  2:1027372‑M2/35‑100 (MQ=255)
                                           gccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                                         >  2:2395174‑M2/34‑100 (MQ=255)
                                           GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                                         <  1:541551‑M1/100‑1 (MQ=255)
                                           GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                                         >  2:2712483‑M1/1‑100 (MQ=255)
                                           GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                                         >  1:2155822‑M1/1‑100 (MQ=255)
                                            ccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCaa                                                        >  1:1473591‑M2/33‑100 (MQ=255)
                                            ccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCaa                                                        >  1:3031110‑M2/33‑100 (MQ=255)
                                             CGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAc                                                       >  2:2734634‑M1/1‑100 (MQ=255)
                                               GATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccg                                                     >  2:774538‑M1/1‑100 (MQ=255)
                                                 taaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgcc                                                   >  1:626084‑M2/28‑100 (MQ=255)
                                                 TGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgcc                                                   <  2:1111477‑M1/100‑1 (MQ=255)
                                                  gCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgccg                                                  <  2:904750/100‑1 (MQ=255)
                                                   cGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCgg                                                 >  1:472538/1‑100 (MQ=255)
                                                      cGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATc                                              >  1:3479116/1‑100 (MQ=255)
                                                      cGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATc                                              >  1:3718905/1‑100 (MQ=255)
                                                       gCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATcc                                             <  2:2296024/100‑1 (MQ=255)
                                                        cTTGACGCGCCTTATCCGGCCTACACCCGGTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCg                                            <  1:2283927/100‑1 (MQ=255)
                                                        cTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCg                                            >  2:1819703/1‑100 (MQ=255)
                                                         ttGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCgg                                           <  1:1232051/100‑1 (MQ=255)
                                                         ttGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCgg                                           <  2:2416300/100‑1 (MQ=255)
                                                          tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCCGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                                          <  2:1093373/100‑1 (MQ=255)
                                                          tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                                          <  2:1637881/100‑1 (MQ=255)
                                                          tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                                          <  2:1807130/100‑1 (MQ=255)
                                                           gACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCa                                         <  2:3469268/100‑1 (MQ=255)
                                                           gACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCa                                         >  1:1371561/1‑100 (MQ=255)
                                                            aCGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCAt                                        >  2:1531154/1‑100 (MQ=255)
                                                             cgcgCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCATCCGCCGGATCCGGCAt                                        <  1:1688679/99‑1 (MQ=255)
                                                             cgcgCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATa                                       >  1:1905575/1‑100 (MQ=255)
                                                              gcgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAc                                      <  1:900348/100‑1 (MQ=255)
                                                               cgcCTTATCCGGCCTACACCCGCTACACGCCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAcc                                     <  2:1680955/100‑1 (MQ=255)
                                                                      tccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAAt                              <  1:1038723‑M2/94‑1 (MQ=255)
                                                                       ccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAAt                              <  2:1424046‑M2/94‑1 (MQ=255)
                                                                       ccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg                             <  1:857242‑M2/95‑1 (MQ=255)
                                                                       ccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg                             <  2:1606791‑M2/95‑1 (MQ=255)
                                                                        cggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc                            <  2:890006‑M2/96‑1 (MQ=255)
                                                                        cggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc                            <  1:1428168‑M2/96‑1 (MQ=255)
                                                                          gcttACACCCGCTACACTCCCCGCAGTCCTGATAATATGCGCCAGCATCGCATCAGGCATTGTTCTCCAACCTCCGGATCCGGCACACCGATTAACGCa                           <  1:917014/96‑1 (MQ=37)
                                                                          gcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAg                          <  1:2242950‑M2/98‑1 (MQ=255)
                                                                             tACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTAc                       >  2:2889541/1‑100 (MQ=255)
                                                                              acacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTAcc                      >  1:1410619/1‑100 (MQ=255)
                                                                               cacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTAccn                     <  1:1155913/100‑2 (MQ=255)
                                                                               cacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCg                     >  2:1017037/1‑100 (MQ=255)
                                                                               cacCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCCCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCg                     >  2:3000712/1‑100 (MQ=255)
                                                                                acCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGt                    <  2:1372145/100‑1 (MQ=255)
                                                                                 cccGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTC                   >  1:2118782‑M1/1‑100 (MQ=255)
                                                                                 cccGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTC                   >  2:584965‑M1/1‑100 (MQ=255)
                                                                                 cccGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAGTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTC                   <  1:339192‑M1/100‑1 (MQ=255)
                                                                                  ccGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCA                  <  2:1452071‑M1/100‑1 (MQ=255)
                                                                                     cTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCG               <  2:2227418‑M1/100‑1 (MQ=255)
                                                                                     cTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCG               <  1:1099537‑M1/100‑1 (MQ=255)
                                                                                     cTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCG               <  2:318692‑M1/100‑1 (MQ=255)
                                                                                       acacacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCG             <  1:3803950‑M1/100‑1 (MQ=255)
                                                                                       acacacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCG             <  2:418496‑M1/100‑1 (MQ=255)
                                                                                       acacacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCG             >  2:1510741‑M1/1‑100 (MQ=255)
                                                                                       acacacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCG             <  2:660746‑M1/100‑1 (MQ=255)
                                                                                         acacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTc           <  1:706821/100‑1 (MQ=255)
                                                                                         acacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTc           <  2:765386/100‑1 (MQ=255)
                                                                                          cacCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCCCCAACCGCCGGAGCCCGCATACCGATTAATGCAGTACCGCCACC                >  1:2209404‑M1/1‑94 (MQ=255)
                                                                                            ccccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTc        >  2:3327079/1‑100 (MQ=255)
                                                                                             cccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTcc       <  1:1945013/100‑1 (MQ=255)
                                                                                             cccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTcc       <  2:2824661/100‑1 (MQ=255)
                                                                                              ccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCa      >  2:3545855/1‑100 (MQ=255)
                                                                                                 cAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcac   <  1:2775308‑M2/100‑66 (MQ=255)
                                                                                                 cAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCctgcggggtgcgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcaattgcac   <  2:1400165‑M2/100‑66 (MQ=255)
                                                                                                 cAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTc   <  2:3636173/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
CAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCG  >  NC_000913/3217391‑3217588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.