New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4285342NA (NA)14 (0.110) 9/164 NT NA noncoding (41/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4285374 NA (NA)noncoding (73/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 222 total aligned reads displayed.

GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCT  >  NC_000913/4285244‑4285441
                                                                                                  |                                                                                                   
gTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTTACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATg                                                                                                    >  1:2505589‑M1/1‑99 (MQ=255)
gTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATg                                                                                                    >  2:3361497‑M1/1‑99 (MQ=255)
 ttttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACTCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGCAATCAATg                                                                                                    >  1:821379‑M1/1‑98 (MQ=255)
  tttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcc                                                                                                  >  2:886661‑M1/1‑97 (MQ=255)
     ttaaccttctcccataaGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctga                                                                                               >  2:271690‑M1/9‑94 (MQ=255)
     ttaaccttctcccataaGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctga                                                                                               >  2:1786589‑M1/9‑94 (MQ=255)
      aTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat                                                                                              >  1:542024‑M1/1‑93 (MQ=255)
      aTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctga                                                                                               >  2:1486713‑M1/1‑93 (MQ=255)
        tCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGc                                                                                            <  2:461131/100‑1 (MQ=255)
            gCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACg                                                                                        >  1:3753626/1‑100 (MQ=255)
               cccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                                                     <  2:167838/100‑1 (MQ=255)
                    aTGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgcg                                                                                >  2:2535299/1‑100 (MQ=255)
                     tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                               <  1:423209/100‑1 (MQ=255)
                     tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                               >  1:2419894/1‑100 (MQ=255)
                      gggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                                                              >  1:2648881/1‑100 (MQ=255)
                       ggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCt                                                                             >  2:2852019/1‑100 (MQ=255)
                       ggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCt                                                                             <  2:3271088/100‑1 (MQ=255)
                        gagaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCtt                                                                            >  1:2886754/1‑100 (MQ=255)
                         agaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgacgcgacagcgtcgcatcagg                                                                           <  2:288627‑M1/100‑27 (MQ=255)
                         agaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTA                                                                           <  2:575998‑M2/100‑1 (MQ=255)
                         agaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTA                                                                           <  2:3524551‑M2/100‑1 (MQ=255)
                          gaAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgacgcgacagcgtcgcatcagg                                                                           <  1:3030012‑M1/99‑27 (MQ=255)
                             ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgacgcgacagcgtcgcatcaggcatt                                                                       <  2:535067‑M1/100‑31 (MQ=255)
                             ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAG                                                                       <  1:1888839‑M2/100‑1 (MQ=255)
                             ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAG                                                                       <  1:3386697‑M2/100‑1 (MQ=255)
                               ttAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC                                                                     <  2:2017232‑M2/100‑1 (MQ=255)
                               ttAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC                                                                     >  2:1359380‑M2/1‑100 (MQ=255)
                               ttAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC                                                                     <  2:1471409‑M2/100‑1 (MQ=255)
                                  aCGCTGGGGTGACCCTTGCCGAATGTAGGCGGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcatt                                                                  <  1:299196‑M1/100‑36 (MQ=255)
                                  aCGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcatt                                                                  <  1:30693‑M1/100‑36 (MQ=255)
                                  aCGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTa                                                                  >  1:1656985/1‑100 (MQ=255)
                                   cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcattg                                                                 <  2:1165582‑M1/100‑37 (MQ=255)
                                   cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTAc                                                                 <  1:9783/100‑1 (MQ=255)
                                   cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTAc                                                                 <  1:3154102/100‑1 (MQ=255)
                                     cTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcattgat                                                               <  2:1943477‑M1/100‑39 (MQ=255)
                                     cTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa                                                               >  2:662399/1‑100 (MQ=255)
                                        gggTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAAcc                                                            <  2:1862904/100‑1 (MQ=255)
                                          gTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGt                                                          <  2:2458633/100‑1 (MQ=255)
                                          gTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGACTGATGCGACGCTGTCGCGTCTTCTCAGGTCTCCACACCGt                                                          >  2:3555594/1‑100 (MQ=21)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                      >  2:3094895/1‑100 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                      <  1:2788899/100‑1 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                      >  1:1443286/1‑100 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                      >  2:1062172/1‑100 (MQ=255)
                                              cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCCGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                      <  2:2191901/100‑1 (MQ=255)
                                               ccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCg                                                     >  1:48472/1‑100 (MQ=255)
                                               ccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCg                                                     >  2:2438520/1‑100 (MQ=255)
                                                cTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGa                                                    >  2:2930460/1‑100 (MQ=255)
                                                 ttGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcgg                                                   <  2:3336382‑M1/100‑51 (MQ=255)
                                                 ttGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGAc                                                   <  2:2060716/100‑1 (MQ=255)
                                                    ccGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCg                                                >  1:87766/1‑100 (MQ=255)
                                                    ccGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCg                                                <  2:347795/100‑1 (MQ=255)
                                                    ccGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCg                                                >  1:1732442/1‑100 (MQ=255)
                                                    ccGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCg                                                <  2:821463/100‑1 (MQ=255)
                                                     cGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGc                                               >  1:683793/1‑100 (MQ=255)
                                                      gAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCa                                              <  1:1032758/100‑1 (MQ=255)
                                                      gAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCa                                              <  2:747856/100‑1 (MQ=255)
                                                       aaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCAt                                             <  2:2403828/100‑1 (MQ=255)
                                                        aTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCTACGCTTTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATc                                            >  1:3556616/1‑100 (MQ=255)
                                                          gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCgg                                          >  1:1839971/1‑100 (MQ=255)
                                                          gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCgg                                          >  1:3672576/1‑100 (MQ=255)
                                                           tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcattgattgccggatgcggcgtaaacgcc                                         <  2:3648703‑M1/100‑61 (MQ=255)
                                                            aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGc                                        >  2:3184585/1‑100 (MQ=255)
                                                             ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGc                                        >  1:3706601/1‑99 (MQ=255)
                                                               ccGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAAt                                     <  2:1229677/100‑1 (MQ=255)
                                                                    tAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTgg                                >  1:3223138/1‑100 (MQ=255)
                                                                    tAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTgg                                <  1:1625206/100‑1 (MQ=255)
                                                                     aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggn                               <  1:1292801/100‑2 (MQ=255)
                                                                     aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                               <  1:3003892/100‑1 (MQ=255)
                                                                     aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                               <  1:1746217/100‑1 (MQ=255)
                                                                     aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                               >  1:1458132/1‑100 (MQ=255)
                                                                      aGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGt                              >  1:460666/1‑100 (MQ=255)
                                                                       ggCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGtt                             >  2:1750946/1‑100 (MQ=255)
                                                                        gCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTa                            <  2:1496412/100‑1 (MQ=255)
                                                                             tACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATg                       <  2:93722/100‑1 (MQ=255)
                                                                             tACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATg                       <  2:1873548/100‑1 (MQ=255)
                                                                               ngccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGAGCCGCATCGGGCAATTGTGGGTTACGATgg                      >  2:1241507/2‑99 (MQ=255)
                                                                               cggcgcATCCGGCAATCAATGCCTGATGCGACCCTGTCGCCTCTTATCAGGCCTACAAACCGGTACCGACCCGCCTCGGGCGATTGTGGGGTAcattg                       >  1:2253634/4‑94 (MQ=17)
                                                                               cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCattgattgccggatgcggcgtaaacgccttatccggcctacattcggc                     <  1:1634784‑M2/100‑49 (MQ=255)
                                                                               cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGc                     >  2:3773555/1‑100 (MQ=255)
                                                                               cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGc                     >  2:3199941/1‑100 (MQ=255)
                                                                               cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGc                     >  2:3296828/1‑100 (MQ=255)
                                                                                 ccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCAt                   >  1:965212/1‑100 (MQ=255)
                                                                                  cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATc                  >  2:1298092/1‑100 (MQ=255)
                                                                                    cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgc                >  2:3499782/1‑100 (MQ=255)
                                                                                    cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgc                <  2:1018069/100‑1 (MQ=255)
                                                                                      tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGa              >  1:1813321/1‑100 (MQ=255)
                                                                                      tCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGa              >  1:2040368/1‑100 (MQ=255)
                                                                                        cGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGaca            <  2:2577677/100‑3 (MQ=255)
                                                                                        cGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATa            <  2:1171042/100‑1 (MQ=255)
                                                                                          gCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGc          >  2:3513700/1‑100 (MQ=255)
                                                                                           caatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGcc         <  1:1271595/100‑1 (MQ=255)
                                                                                           caatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGcc         >  1:987092/1‑100 (MQ=255)
                                                                                            aatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCt        <  2:2472198/100‑1 (MQ=255)
                                                                                             atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTg       >  1:324590/1‑100 (MQ=255)
                                                                                              tcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGc      <  2:3026406/100‑1 (MQ=255)
                                                                                                aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCtt    >  2:2297887/1‑100 (MQ=255)
                                                                                                aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCtt    >  1:74337/1‑100 (MQ=255)
                                                                                                 atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCattgcttgccggatgcggcgtaaacgccttatccggcctacattcggcaagggttacccgagcgtt   <  1:2336063‑M2/100‑67 (MQ=255)
                                                                                                 atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCattgattgccggatgcggcgtaaacgccttatccggcctacattcggcaagggttacccgagcgtt   <  2:383429‑M2/100‑67 (MQ=255)
                                                                                                  tGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTtct  >  2:2512192/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
GTTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCT  >  NC_000913/4285244‑4285441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.