New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 213635NA (NA)13 (0.100) 7/164 NT NA noncoding (4/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 213668 NA (NA)noncoding (37/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 171 total aligned reads displayed.

GCTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTT  >  NC_000913/213536‑213734
                                                                                                   |                                                                                                   
gCTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGaaa                                                                                                     >  2:2153495/1‑100 (MQ=255)
 cTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAg                                                                                                    <  1:94742‑M1/100‑2 (MQ=255)
   gATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgcc                                                                                                  >  2:269765‑M1/1‑97 (MQ=255)
    aTTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccg                                                                                                 <  1:1185180‑M1/100‑5 (MQ=255)
     ttGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgg                                                                                                <  1:1413499‑M1/100‑6 (MQ=255)
     ttGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgg                                                                                                <  2:3339831‑M1/100‑6 (MQ=255)
     ttGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgg                                                                                                <  2:1820667‑M1/100‑6 (MQ=255)
      tGCGGCGGCAGGGGTATTTGTGACGAAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgga                                                                                               <  1:759260‑M1/100‑7 (MQ=255)
         ggcggcAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATaa                                                                                            >  1:101912/1‑100 (MQ=255)
          gcggcAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAg                                                                                           <  1:232691/100‑1 (MQ=255)
               aGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGc                                                                                       <  2:1749963/99‑1 (MQ=255)
                 gggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATc                                                                                    >  2:1875549/1‑100 (MQ=255)
                 gggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATc                                                                                    <  2:1999078/100‑1 (MQ=255)
                   gTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCaa                                                                                  >  2:3287844/1‑100 (MQ=255)
                     aTTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAAc                                                                                <  2:3450394/100‑1 (MQ=255)
                      tttGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACg                                                                               >  1:490402/1‑100 (MQ=255)
                        tgtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTTTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTc                                                                             <  2:2582959/100‑1 (MQ=255)
                         gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            <  2:2921690/100‑1 (MQ=255)
                         gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            >  1:3711677/1‑100 (MQ=255)
                          tgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGc                                                                           <  2:2522644/100‑1 (MQ=255)
                           gACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCA                                                                          >  1:2627913‑M2/1‑100 (MQ=255)
                           gACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCA                                                                          <  1:3468082‑M2/100‑1 (MQ=255)
                             cGCAAGAAGGTTTGGCTGAAGGTGAGACTGGAGTAAGTCGTGTCTGGCAGAAAACGCTTAGATAAGTGAAAGCAGGATAAGACGCATCAAACggc                                                                             <  1:2520271/95‑3 (MQ=255)
                               cAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccg                                                                      <  1:1906659‑M1/100‑32 (MQ=255)
                               cAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCG                                                                      <  1:1823874‑M2/100‑1 (MQ=255)
                               cAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCG                                                                      <  2:3658326‑M2/100‑1 (MQ=255)
                                aagaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccgg                                                                     <  2:2610605‑M1/100‑33 (MQ=255)
                                 agaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggc                                                                    <  1:1268125‑M1/100‑34 (MQ=255)
                                  gaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggct                                                                   <  1:2943550‑M1/100‑35 (MQ=255)
                                  gaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCg                                                                   <  1:134649/100‑1 (MQ=255)
                                  gaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCg                                                                   <  1:3030186/100‑1 (MQ=255)
                                  gaagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCg                                                                   >  1:21362/1‑100 (MQ=255)
                                   aagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctt                                                                  <  2:3138983‑M1/100‑36 (MQ=255)
                                   aagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctt                                                                  <  1:97503‑M1/100‑36 (MQ=255)
                                   aagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctt                                                                  <  1:1488942‑M1/100‑36 (MQ=255)
                                      gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                               <  2:3176019/100‑1 (MQ=255)
                                       tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                              >  1:3313649/1‑100 (MQ=255)
                                       tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                              >  1:1331555/1‑100 (MQ=255)
                                       tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                              <  1:611740/100‑1 (MQ=255)
                                        ggggctGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctttcact                                                             <  1:3141074‑M1/98‑41 (MQ=255)
                                          ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                           >  2:3387785/1‑100 (MQ=255)
                                          ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                           >  2:1018434/1‑100 (MQ=255)
                                           gCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAAt                                                          >  2:3199966/1‑100 (MQ=255)
                                           gCTGAAAGTGAGAATGGCGTCAGTTTTGTCTGGCAGAAAACGCCCAGTTAAGTGAAAGCCGGAAAAGACGCCTCAAACGCCGCATCCGGCGAAAGTCAAt                                                          <  1:3223794/100‑1 (MQ=255)
                                             tGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCa                                                        >  2:2622122/1‑100 (MQ=255)
                                              gAAGGTGAGAATGGTGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAg                                                       >  2:1490656/1‑100 (MQ=255)
                                                 ggTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAt                                                    >  2:3704976/1‑100 (MQ=255)
                                                  gTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAtt                                                   <  2:1996051/100‑1 (MQ=255)
                                                   tGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTc                                                  >  1:282240/1‑100 (MQ=255)
                                                    gagaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTc                                                  >  1:3120942/1‑99 (MQ=255)
                                                    gagaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCg                                                 <  1:1937437/100‑1 (MQ=255)
                                                     agaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGc                                                >  2:2097535/1‑100 (MQ=255)
                                                     agaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGc                                                >  1:2042754/1‑100 (MQ=255)
                                                      gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                               >  2:3241595/1‑100 (MQ=255)
                                                      gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                               >  1:1056005/1‑100 (MQ=255)
                                                       aaTGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCtt                                              <  2:3677826/100‑1 (MQ=255)
                                                       aaTGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCtt                                              <  1:854745/100‑1 (MQ=255)
                                                        aTGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTa                                             >  2:3047958/1‑100 (MQ=255)
                                                          ggCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacc                                           >  1:2514738/1‑100 (MQ=255)
                                                            cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                         >  2:3586515/1‑100 (MQ=255)
                                                              tAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccacca                                       >  2:660133/1‑100 (MQ=255)
                                                              tAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccacca                                       >  1:2615292/1‑100 (MQ=255)
                                                               aaGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGCAAGTCAATCAGGATTCGCTTaccaccac                                      >  1:3510814/1‑100 (MQ=255)
                                                               aaGTGTTGTCAGGGAGAAAACGGTTAGTTAAGTGAGAGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccag                                        >  1:3784487‑M2/1‑70 (MQ=255)
                                                                 gTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGGAAGCCGGATTAGACGCATAAAACGTCGCATCGGGCGAAAGTAAATCAGGATTCGCTTATCACCACCg                                    >  1:3681767/1‑100 (MQ=255)
                                                                  ttttGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGt                                   >  1:1550736/1‑100 (MQ=255)
                                                                    ttGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAc                                 <  2:847964/100‑1 (MQ=255)
                                                                     tGTCTGGCAGAAAACGCTTAGTTAATTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTa                                  <  2:1227525/98‑1 (MQ=255)
                                                                       tCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGa                              <  1:1255533/100‑1 (MQ=255)
                                                                         tGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAtt                            >  2:1030346/1‑100 (MQ=255)
                                                                          ggCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAttt                           >  1:278944/1‑100 (MQ=255)
                                                                            cAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACTGATTTcc                         >  2:1767676/1‑100 (MQ=255)
                                                                             aGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCg                        <  1:2775365/100‑1 (MQ=255)
                                                                               aaaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCggg                      <  1:771767/100‑1 (MQ=255)
                                                                                aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                     <  2:3494987/100‑1 (MQ=255)
                                                                                 aaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTg                    >  2:1701489/1‑100 (MQ=255)
                                                                                  aCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTgg                   >  1:3188631/1‑100 (MQ=255)
                                                                                   cGCTTAGTTAAGTGAAAGCTGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                  <  2:1084449/100‑1 (MQ=255)
                                                                                   cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                  <  2:3711706/100‑1 (MQ=255)
                                                                                    gCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCt                 <  1:3544485/100‑1 (MQ=255)
                                                                                      ttAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTaa               <  2:608629/100‑1 (MQ=255)
                                                                                       tAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTaaa              >  2:2792554/1‑100 (MQ=255)
                                                                                        aGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAg             <  1:988673/100‑1 (MQ=255)
                                                                                        aGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAg             >  1:231502/1‑100 (MQ=255)
                                                                                         gTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGc            >  2:2687299/1‑100 (MQ=255)
                                                                                           tAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTg          >  2:949403/1‑100 (MQ=255)
                                                                                           tAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTg          >  2:532778/1‑100 (MQ=255)
                                                                                              gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa       >  2:2701625/1‑100 (MQ=255)
                                                                                              gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa       >  1:2016869/1‑100 (MQ=255)
                                                                                              gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa       >  1:2447390/1‑100 (MQ=255)
                                                                                               tGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTaa      >  2:2254210/1‑100 (MQ=255)
                                                                                                gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt     >  2:2977888/1‑100 (MQ=255)
                                                                                                gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt     >  2:1542833/1‑100 (MQ=255)
                                                                                                 aaaGCCGGATAAGACGCATCAGACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt    <  2:3455103/100‑1 (MQ=255)
                                                                                                  aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacacctt   <  1:2977650‑M2/100‑66 (MQ=255)
                                                                                                  aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacacctt   <  1:97503‑M2/100‑66 (MQ=255)
                                                                                                  aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacacctt   <  2:3202734‑M2/100‑66 (MQ=255)
                                                                                                  aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAATCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt   <  2:398340/100‑1 (MQ=255)
                                                                                                   aGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacaccttc  <  1:2943550‑M2/100‑67 (MQ=255)
                                                                                                   aGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt  >  1:182674/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTT  >  NC_000913/213536‑213734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.