New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 349605 =NA (NA)15 (0.120) 6/164 NT NA noncoding (1/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349637 = NA (NA)noncoding (33/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

Only 100 of 234 total aligned reads displayed.

AAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT  >  NC_000913/349506‑349704
                                                                                                   |                                                                                                   
ccgtaggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagg                                                                                                     <  1:1756891‑M1/1‑1 (MQ=255)
  gtaggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGcc                                                                                                   >  1:3442820‑M1/98‑100 (MQ=255)
  gtaggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGcc                                                                                                   <  2:3769735‑M1/3‑1 (MQ=255)
  gCATCAACGACTACCAGTACGAAGAGAAGATCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGcc                                                                                                   <  2:2302570/100‑1 (MQ=255)
   taggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcctagGCCt                                                                                                  >  2:1993196‑M1/97‑100 (MQ=255)
    aggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCt                                                                                                  >  1:3138651‑M1/96‑99 (MQ=255)
    aTCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTg                                                                                                 >  2:953348/1‑100 (MQ=255)
     ggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGa                                                                                                <  1:2670832‑M1/6‑1 (MQ=255)
     ggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGa                                                                                                >  2:1425831‑M1/95‑100 (MQ=255)
     ggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgaacctcgtagGCCTGa                                                                                                <  2:2643386‑M1/6‑1 (MQ=255)
      gcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGAt                                                                                               <  2:2160313‑M1/7‑1 (MQ=255)
       aaCTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATg                                                                                              >  2:1034418/1‑100 (MQ=255)
       aaCGACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGAt                                                                                               <  1:2087350/99‑1 (MQ=255)
        actactACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGc                                                                                             >  1:359865/1‑100 (MQ=255)
        actactACCAGTACGAAGACAATCCCTACAAACTGTTTGTCCGTAGCCAAGTGAAATAAAAAACGCCCCTTGATTGTATTCGACAGCCGATGCCTGATg                                                                                              <  1:756494/99‑1 (MQ=255)
         tgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCg                                                                                            >  2:3542970‑M1/91‑100 (MQ=255)
          tactacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCg                                                                                            >  1:3486368/1‑99 (MQ=255)
            ctacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCg                                                                                         >  1:1201594/1‑100 (MQ=255)
             tacCAGTACGAAGAGAAGCTCGACAACCTCTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGc                                                                                        <  1:2287582/100‑1 (MQ=255)
              acCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCt                                                                                       >  1:1039194/1‑100 (MQ=255)
              acCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCt                                                                                       <  1:2031723/100‑1 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      >  1:953424/1‑100 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      <  2:1235563/100‑1 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      >  2:1317637/1‑100 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCAGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      >  1:92501/1‑100 (MQ=255)
                 aGTACGAAGAGAAGCTCGACAACCTGTTTGCCAGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGTTGAc                                                                                    >  2:3607593/1‑100 (MQ=255)
                     cGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                >  2:2184663/1‑100 (MQ=255)
                     cGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                >  1:2926529/1‑100 (MQ=255)
                     cGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTAGTCGACAGCCGATGCCTGAGGCGTCGCTGAcgcg                                                                                 >  2:2065447/1‑99 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  1:320420/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  1:3380207/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  2:1545284/100‑1 (MQ=255)
                       aaGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACt                                                                              >  2:3225129/1‑100 (MQ=255)
                        agagAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACtt                                                                             <  2:1572163/100‑1 (MQ=255)
                           gcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATc                                                                          >  1:943315‑M1/73‑100 (MQ=255)
                            aaGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCa                                                                         >  1:2361296/1‑100 (MQ=255)
                             aGCTCGACAACCTGTTTGCCCGTAGGCAGGGGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAg                                                                        <  1:3226877/100‑1 (MQ=255)
                             aGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGCCGCTGACGCGACTTATCAg                                                                        >  1:2175959/1‑100 (MQ=255)
                              gCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       <  1:3680568/100‑1 (MQ=255)
                              gCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       >  1:152452/1‑100 (MQ=255)
                              gCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       >  2:3719683/1‑100 (MQ=255)
                              gCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       >  2:1220930/1‑100 (MQ=255)
                              catcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       >  2:981046‑M1/70‑100 (MQ=255)
                               cTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      <  1:553095/100‑1 (MQ=255)
                               cTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      >  1:1294402/1‑100 (MQ=255)
                               atcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      >  2:1479044‑M1/69‑100 (MQ=255)
                               atcacgcatcggttgtcggatgcgacgccatgcgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCGGACGCGACTTATCAGGc                                                                      >  1:3695078‑M1/69‑100 (MQ=255)
                                tcaggcatcggttgtcggatgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtagGCCTGATGCGCCGCTGACGTGACTTATCAGGcc                                                                     >  1:2876891‑M1/68‑100 (MQ=255)
                                tcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGcc                                                                     >  2:2480640‑M1/68‑100 (MQ=255)
                                tcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGcc                                                                     >  2:3077942‑M1/68‑100 (MQ=255)
                                gctggcatcggtcgtcggatgcgacgcgatgcgtcttatccgacctacagttcagtgcaccccgtagGCCTGAGGCGCCGCTGACGCGACTTATCAGGcc                                                                     >  1:3276806‑M1/68‑100 (MQ=255)
                                  aggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTa                                                                   >  2:489973‑M1/66‑100 (MQ=255)
                                  aggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTa                                                                   >  2:2519974‑M1/66‑100 (MQ=255)
                                    cAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACg                                                                 <  2:2044319/100‑1 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              <  2:347226/100‑1 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              >  2:337298/1‑100 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              >  1:2477177/1‑100 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              >  2:1342550/1‑100 (MQ=255)
                                        cTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGt                                                             <  1:1015115/100‑1 (MQ=255)
                                            ttGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCAc                                                         <  2:1920360/100‑1 (MQ=255)
                                            ttGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCAc                                                         <  1:126028/100‑1 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       >  2:1685440/1‑100 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       >  2:1898369/1‑100 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       <  2:2729153/100‑1 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       <  1:514280/100‑1 (MQ=255)
                                               cccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCATCGCTGACGCGCCTTATCAGGCCTACGAGGTAGACTGa                                                      >  1:3542910/1‑100 (MQ=37)
                                                 cGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAAc                                                    >  1:2194550/1‑100 (MQ=255)
                                                    aGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGt                                                 >  1:1674743/1‑100 (MQ=255)
                                                       cAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGG                                              >  2:220512‑M1/1‑100 (MQ=255)
                                                       cAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGG                                              >  1:1403548‑M1/1‑100 (MQ=255)
                                                        aGGTGAAATAAAAAACGCCCGTTGATTGTATTCGCCAGCCGATGCCTGATGCGTCGCTGACGCCACTTATCAGGCCTACGAGGTGCACTGAACTGTAg                                               <  1:3730743/98‑1 (MQ=255)
                                                         ggTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTC                                            >  1:1002426‑M1/1‑100 (MQ=255)
                                                          gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCG                                           <  2:637210‑M1/100‑1 (MQ=255)
                                                            gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGA                                         <  1:2741631‑M1/100‑1 (MQ=255)
                                                             aaaTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGAT                                        <  2:466848‑M1/100‑1 (MQ=255)
                                                               atcaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCCTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTCGGTCGGATaa                                      <  1:3026953/97‑1 (MQ=255)
                                                                tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAg                                     >  2:834661/1‑100 (MQ=255)
                                                                tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAg                                     >  1:847961/1‑100 (MQ=255)
                                                                 aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAg                                     >  2:1974155/1‑99 (MQ=255)
                                                                 aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGa                                    >  2:2440791/1‑100 (MQ=255)
                                                                   ttatccgacctacagttcagtgcaccccgtagGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACg                                  >  2:1173443‑M1/33‑100 (MQ=255)
                                                                   aaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACg                                  <  2:424531/100‑1 (MQ=255)
                                                                       cGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                              <  2:1863324/100‑1 (MQ=255)
                                                                          ccGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCATAGCg                           >  1:212121/1‑100 (MQ=255)
                                                                                 ttGTATTCGACAGCCGATGCCTGATGCGTCGCTGCCGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCAt                     <  1:1709078/99‑1 (MQ=255)
                                                                                  tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATcc                   <  2:714022/100‑1 (MQ=255)
                                                                                  tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATcc                   <  2:2255380/100‑1 (MQ=255)
                                                                                   gTATTCGACAGCCGATGGCTGATGCGTCGCTGACGCGACTTAGCAGGCCTACGTAGTGGCCTGAACTGTAGGTCGGATAAGAAGGATGGCGTCGCATCCg                  <  2:616353/100‑1 (MQ=17)
                                                                                    tATTCGACAGCCGATGCCTGATGTGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGa                 <  2:1692935/100‑1 (MQ=255)
                                                                                    tATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGa                 >  2:1745810/1‑100 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgac                <  2:2799018‑M1/100‑25 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGAc                >  1:2217533/1‑100 (MQ=255)
                                                                                      ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGAc                >  1:645950/1‑99 (MQ=255)
                                                                                       tCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACa               >  2:613204/1‑99 (MQ=255)
                                                                                        cGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgaccta             <  2:2926547‑M1/100‑28 (MQ=255)
                                                                                           cAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGa          >  1:2644795/1‑100 (MQ=255)
                                                                                             gCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATg        >  2:81139/1‑100 (MQ=255)
                                                                                             gCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATg        <  1:979339/100‑1 (MQ=255)
                                                                                                   GCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAt  >  1:450362‑M1/1‑100 (MQ=255)
                                                                                                   GCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGGTGCATCCGACAACCGATGTCTGAt  <  1:1476351‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT  >  NC_000913/349506‑349704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.