New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1040547 =NA (NA)11 (0.090) 7/158 NT NA noncoding (5/36 nt) REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1040579 = NA (NA)intergenic (+42/‑38) cbdX/appA putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

Only 100 of 187 total aligned reads displayed.

TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT  >  NC_000913/1040448‑1040646
                                                                                                   |                                                                                                   
tgGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAgg                                                                                                     <  2:3448359/100‑1 (MQ=255)
tgGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAgg                                                                                                     >  2:3791613/1‑100 (MQ=255)
 ggTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGc                                                                                                    >  1:3734248/1‑100 (MQ=255)
 ggTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGc                                                                                                    >  2:237922/1‑100 (MQ=255)
  gcagattgcggggttaacggaatcagaagatataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGcc                                                                                                   >  1:2433041‑M1/98‑100 (MQ=255)
  gcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGcc                                                                                                   >  1:2899408‑M1/98‑100 (MQ=255)
  gcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGcc                                                                                                   >  1:1847823‑M1/98‑100 (MQ=255)
  gTATTTACTTTGTTTCGTCGGCAGTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCGGGACCCGCGTCTGAAAAGTTAACGAACGTAgg                                                                                                     <  1:1603599/98‑1 (MQ=255)
   tATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCt                                                                                                  >  1:1010388/1‑100 (MQ=255)
    agattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCctn                                                                                                 >  1:1663153‑M1/96‑99 (MQ=255)
    agattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTg                                                                                                 >  2:2757848‑M1/96‑100 (MQ=255)
    aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTg                                                                                                 <  2:549142/100‑1 (MQ=255)
    aTTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTg                                                                                                 >  2:2265189/1‑100 (MQ=255)
     tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGa                                                                                                >  2:1504583/1‑100 (MQ=255)
     gattgcggtgttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGa                                                                                                <  1:1257634‑M1/6‑1 (MQ=255)
     gattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGa                                                                                                >  2:611430‑M1/95‑100 (MQ=255)
      ttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGAt                                                                                               <  1:2032547/100‑1 (MQ=255)
      attgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGAt                                                                                               <  1:1965416‑M1/7‑1 (MQ=255)
       ttgcggggttaatgtaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATg                                                                                              >  1:596764‑M1/93‑100 (MQ=255)
         cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcg                                                                                            >  1:1059251/1‑100 (MQ=255)
          cggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgc                                                                                             <  1:3623981‑M1/9‑1 (MQ=255)
            tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggcg                                                                                         <  2:1886370/100‑1 (MQ=255)
             ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc                                                                                          >  1:836240/1‑98 (MQ=255)
             ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGgcgc                                                                                        >  1:899016/1‑100 (MQ=255)
             ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGgcgc                                                                                        >  1:3188323/1‑100 (MQ=255)
             ggTTCGGCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGgcgc                                                                                        <  1:106052/100‑1 (MQ=255)
              gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGtcgc                                                                                        >  1:1293503/1‑99 (MQ=255)
              gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       >  2:1231711/1‑100 (MQ=255)
              gTTCGTAGGCATTTTGTTGATGTGTTCGCTCTACACCCTAGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       >  1:593316/1‑100 (MQ=255)
                   tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc                                                                                  <  2:2080712/100‑1 (MQ=255)
                    cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgca                                                                                 <  2:1306955/100‑1 (MQ=255)
                    cgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgca                                                                                 <  2:3314816/100‑1 (MQ=255)
                     ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcat                                                                                >  2:2690900/1‑100 (MQ=255)
                     ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcat                                                                                <  1:700261/100‑1 (MQ=255)
                     ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcat                                                                                >  2:3146766/1‑100 (MQ=255)
                       cATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcg                                                                              <  2:1694130/100‑1 (MQ=255)
                           ttgttgATGTGTTCGCTCTCCCCCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgcatcgcatc                                                                          <  2:1475356/100‑1 (MQ=255)
                           gaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAgcatcgcatc                                                                          >  2:3594899‑M1/73‑100 (MQ=255)
                             agagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAg                                                                        >  2:1161331‑M1/71‑100 (MQ=255)
                              ttgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       <  2:2315499/100‑1 (MQ=255)
                              gagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  2:248518‑M1/70‑100 (MQ=255)
                               tgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGGATCAGGc                                                                      >  1:2971028/1‑100 (MQ=255)
                               tgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  1:2107133/1‑99 (MQ=255)
                               tgATGTGTTCGCTCTCCACCATTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGc                                                                      <  1:496654/100‑1 (MQ=255)
                               tgATGTGTGCGCTCTCCACCCTTGTATTGGTACGGCTGGACCCGCGTCTGAAGAGTTTACGAACGGCGGCCTGATGCGGCGCATTAGCATCGCATCAg                                                                        >  1:385815/1‑98 (MQ=255)
                               agataaaaatgggattaagatcgctttcatcgatatttttccgcttttcatatctgacagtattgattGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  2:2506270‑M1/69‑99 (MQ=255)
                               agataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGc                                                                      >  1:778195‑M1/69‑100 (MQ=255)
                               agataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGc                                                                      >  2:482468‑M1/69‑100 (MQ=255)
                                 ataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaa                                                                    >  1:1997749‑M1/67‑100 (MQ=255)
                                  tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGGCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                   >  2:542922/1‑100 (MQ=255)
                                   gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                  >  1:3751447/1‑100 (MQ=255)
                                   gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                  <  2:3564605/100‑1 (MQ=255)
                                     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                >  1:1301610/1‑100 (MQ=255)
                                     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                >  2:627608/1‑100 (MQ=255)
                                      ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                               <  2:2064074/100‑1 (MQ=255)
                                       tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata                                                              >  2:1580737/1‑100 (MQ=255)
                                       tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata                                                              >  2:1627296/1‑100 (MQ=255)
                                         gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                               >  1:2525757/1‑97 (MQ=255)
                                         gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                            >  1:3477441/1‑100 (MQ=255)
                                         gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                            >  2:427611/1‑100 (MQ=255)
                                          ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg                                                           <  2:2623300/100‑1 (MQ=255)
                                            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                         >  1:275497/1‑100 (MQ=255)
                                            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                         >  2:2813663/1‑100 (MQ=255)
                                            ctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                         >  1:3357448/1‑100 (MQ=255)
                                             tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                        <  1:3668286/100‑1 (MQ=255)
                                             tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                        <  2:2871281/100‑1 (MQ=255)
                                              ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                       <  1:2593878/100‑1 (MQ=255)
                                              ccACACTTGTGTTGGTATGGGTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCat                                                       <  1:3402138/100‑2 (MQ=255)
                                                aCCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGat                                                     >  2:951128/1‑100 (MQ=255)
                                                 cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                    <  2:336170/100‑1 (MQ=255)
                                                   cTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATg                                                  <  2:1059256/100‑1 (MQ=255)
                                                    cgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATg                                                  >  2:2280885‑M1/48‑99 (MQ=255)
                                                       tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                              >  2:2349667/1‑100 (MQ=255)
                                                          tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTCGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                           >  2:975098/1‑100 (MQ=255)
                                                          tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                           >  2:2165167/1‑100 (MQ=255)
                                                             tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                        <  2:3249787/100‑1 (MQ=255)
                                                              aTGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaaa                                       <  2:458927/100‑1 (MQ=255)
                                                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCTATCAATAATGTCAGATATGAAAAGCGGAAACa                                     <  2:3604021/100‑1 (MQ=255)
                                                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     <  2:2595617/100‑1 (MQ=255)
                                                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     <  1:92891/100‑1 (MQ=255)
                                                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     >  1:3128225/1‑100 (MQ=255)
                                                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     <  1:1887619/100‑1 (MQ=255)
                                                                 gCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAACCAATAATGTCAGATATGAAAAGCGGAAACat                                    >  1:982326/1‑100 (MQ=255)
                                                                       cccgcgaacgAAAAGTTACCGAACGTAGGCCCGAAGCAGCGCCTCAGCATCGCATCAAAAGCTCAACAATGTCAGATATGAAAAGCGGAAACCTATCGa                               >  1:3174693/10‑99 (MQ=255)
                                                                         cgcgTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGa                            >  2:2885660/1‑100 (MQ=255)
                                                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                      >  2:2664620/1‑100 (MQ=255)
                                                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                      >  1:158977/1‑100 (MQ=255)
                                                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                      >  1:2947736/1‑100 (MQ=255)
                                                                                 aaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATc                    <  1:286335/100‑1 (MQ=255)
                                                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                >  2:2611537/1‑100 (MQ=255)
                                                                                     gTTAACGAACGGAGGCCGGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                <  2:836245/100‑1 (MQ=255)
                                                                                      ttAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAt               <  2:304065/100‑1 (MQ=255)
                                                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc              >  1:36773/1‑100 (MQ=255)
                                                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc              >  1:1007500/1‑100 (MQ=255)
                                                                                             acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt        >  1:1708716/1‑100 (MQ=255)
                                                                                               gTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttttt      <  2:940358/100‑1 (MQ=255)
                                                                                                tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa     >  2:3767815/1‑100 (MQ=255)
                                                                                                tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa     <  1:237920/100‑1 (MQ=255)
                                                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc   <  2:2036357/100‑1 (MQ=255)
                                                                                                   GCCTGATGCGGCGCATTAGTATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct  <  2:2460699‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGGTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT  >  NC_000913/1040448‑1040646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.