BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3163644 =	NA (NA)	11 (0.090)	6/160	NT	NA	noncoding (1/30 nt)	REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	3163674 =	NA (NA)	11 (0.090)	6/160	NT	NA	intergenic (‑193/+41)	plsC/parC	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A

Only 100 of 183 total aligned reads displayed.

TTAATCGCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACGATCGA  >  NC_000913/3163575‑3163773

ttAATCGCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCg                                                                                                     <  1:607523/100‑1 (MQ=255)

ttAATCGCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCg                                                                                                     <  2:3453522/100‑1 (MQ=255)

ttAATCGCAACGCATGAATAAACAACGGTCTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCg                                                                                                     >  2:1340715/1‑100 (MQ=255)

tgccagcagcggtgatagcgaagagtaatatgccggggagggcgctgtttcctcccgcttgcaaggaacGCCGGATGACGACTTAACGTTTCATCCGGCg                                                                                                     >  2:1039661‑M1/70‑100 (MQ=255)

 gccagcagcggtgatagcgaagagtaatatgccggggagggcgctgtttcctcccgcttgcaaggaacGCCGGATGACGACTTAACGTTTCATCCGGCg                                                                                                     >  2:2624710‑M1/69‑99 (MQ=255)

    tCGCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTcc                                                                                                 <  2:3610627/100‑1 (MQ=255)

      gCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCtt                                                                                               <  2:200078/100‑1 (MQ=255)

      gCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCtt                                                                                               >  2:2403183/1‑100 (MQ=255)

       cAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTg                                                                                              >  2:682916/1‑100 (MQ=255)

        gcggtgatagcgaagagtaatatggcggggagggcgctgtttcctcccgcttgcaaggaacGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGc                                                                                             >  1:1750482‑M1/62‑100 (MQ=255)

        aaCGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGc                                                                                             <  2:886297/100‑1 (MQ=255)

            cATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGc                                                                                         <  1:2741845/100‑1 (MQ=255)

              tGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCgg                                                                                       >  2:3397851/1‑100 (MQ=255)

                aaTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGgga                                                                                     <  2:2011892/100‑1 (MQ=255)

                aaTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGgga                                                                                     >  2:1232732/1‑100 (MQ=255)

                 aTAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggag                                                                                    <  2:401243/100‑1 (MQ=255)

                  tAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagg                                                                                   <  2:1703547/100‑1 (MQ=255)

                  tAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagg                                                                                   <  2:1978190/100‑1 (MQ=255)

                  tAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagg                                                                                   <  2:3554242/100‑1 (MQ=255)

                   aaaCAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga                                                                                  >  2:288369/1‑100 (MQ=255)

                   aaaCAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga                                                                                  >  2:3256101/1‑100 (MQ=255)

                   aaaCAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga                                                                                  >  1:2248339/1‑100 (MQ=255)

                   aaaCAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGggagga                                                                                  >  2:1541409/1‑100 (MQ=255)

                    aacaacGGTTTCAAGGGGATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGaa                                                                                 >  2:1271767/1‑100 (MQ=255)

                    aacaacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGaa                                                                                 >  2:3413447/1‑100 (MQ=255)

                      caacGGTTTCAAGGGGATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAAc                                                                               <  1:690203/100‑1 (MQ=255)

                      caacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAAc                                                                               >  2:3725716/1‑100 (MQ=255)

                      caacGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTACTTCCAAGCGGGAGGAAAc                                                                               >  1:3472734/1‑100 (MQ=255)

                        acGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAg                                                                             >  2:1087019/1‑100 (MQ=255)

                         cGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATCCGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGCGGAAACAg                                                                             >  1:3393775/1‑99 (MQ=255)

                          ggTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAgcg                                                                           >  1:2972093/1‑100 (MQ=255)

                          ggTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAgcg                                                                           <  1:950540/100‑1 (MQ=255)

                           gTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAgcgc                                                                          >  2:927522/1‑100 (MQ=255)

                             ttCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGccc                                                                        <  2:717884/100‑1 (MQ=255)

                              taaaGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTACCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCt                                                                       >  2:1098877/3‑100 (MQ=255)

                               cAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGccc                                                                        >  1:2321937/1‑98 (MQ=255)

                                 aGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTccc                                                                    >  2:2369204/1‑100 (MQ=255)

                                 aGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTccc                                                                    <  1:2611353/100‑1 (MQ=255)

                                  gggAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTcccc                                                                   >  2:225124/1‑100 (MQ=255)

                                   ggAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCg                                                                  >  2:515798/1‑100 (MQ=255)

                                     aaTTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGc                                                                <  2:223993/100‑1 (MQ=255)

                                     aaTTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGc                                                                >  2:2822771/1‑100 (MQ=255)

                                      aTTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCa                                                               >  2:630653/1‑100 (MQ=255)

                                       tttttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCat                                                              <  1:765788/100‑1 (MQ=255)

                                        ttttATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCata                                                             <  1:467015/100‑1 (MQ=255)

                                        ctttATCGTTTCCGGGGGTTGAATACGCTGCCGGCTGAAGACTTAACTTGTCATCCGGCATTACTTGCAAGCGGCGGGACACAGCACCCCCCCCg                                                                  >  1:1792491/2‑95 (MQ=255)

                                            aTCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTAc                                                         <  1:1285986/100‑1 (MQ=255)

                                            aTCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTAc                                                         >  2:2990870/1‑100 (MQ=255)

                                             tCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTAct                                                        >  2:528741/1‑100 (MQ=255)

                                              cGTTTCCGGGGGTTGAATACGCTGCCGGATGACTACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTActc                                                       <  1:3654114/100‑1 (MQ=255)

                                              cGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTActc                                                       <  2:2379619/100‑1 (MQ=255)

                                               gTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTActct                                                      >  1:2670135/1‑100 (MQ=255)

                                                 ttCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTc                                                    <  1:2004728/100‑1 (MQ=255)

                                                   ccGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGACAACAGCGACCTCCCCGGCATATTACTCTTCGc                                                  >  1:3297431/1‑100 (MQ=255)

                                                   ccGGGAGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCTAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGc                                                  <  1:943305/100‑1 (MQ=255)

                                                    cGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCt                                                 >  1:56610/1‑100 (MQ=255)

                                                    cGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCt                                                 >  2:2925255/1‑100 (MQ=255)

                                                    cGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCCACACGGCATATTACTCttacc                                                  >  1:2058844/1‑96 (MQ=255)

                                                    cGGGGGTTGAATACGCTGCCGGATAAAGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGAAAGGAACAGCGCGCTCCCCGGCATATTACTCTTCGCt                                                 >  1:2752853/1‑100 (MQ=255)

                                                     gggggTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTa                                                >  1:3053474/1‑100 (MQ=255)

                                                        ngTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCa                                             >  1:3237982/2‑100 (MQ=255)

                                                        ggTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCa                                             <  1:1978234/100‑1 (MQ=255)

                                                         gTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCAc                                            <  2:1299071/100‑1 (MQ=255)

                                                          ttGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCAcc                                           >  1:3145988/1‑100 (MQ=255)

                                                            gcaaggaacgccggatgaaacgttaagtcgtcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGCCATATTACTCTTCGCTATCACCgc                                         >  1:1750482‑M2/40‑100 (MQ=255)

                                                            gAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCgc                                         <  1:2137119/100‑1 (MQ=255)

                                                               tACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCgctgc                                      <  1:2184509/100‑1 (MQ=255)

                                                                 cGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGctgctg                                    <  2:2541263/100‑1 (MQ=255)

                                                                 cGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGctgctg                                    >  2:688582/1‑100 (MQ=255)

                                                                   cTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGc                                  <  1:1064996/100‑1 (MQ=255)

                                                                    cgccggatgaaacgttaagtcgtcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGc                                  >  2:2624710‑M2/32‑99 (MQ=255)

                                                                    cgccggatgaaacgttaagtcgtcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCACTCCCCGGCGTATGACTCTTCGCTATCACCGCCGCGGGc                                  >  1:2295792‑M2/32‑99 (MQ=255)

                                                                     gccggatgaaacgttaagtcgtcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCAc                                >  1:2642826‑M2/31‑100 (MQ=255)

                                                                     GCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCAc                                <  1:1099246‑M1/100‑1 (MQ=255)

                                                                      ccggatgaaacgttaagtcgtcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACg                               >  2:3289251‑M2/30‑100 (MQ=255)

                                                                      CCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACg                               <  2:3561637‑M1/100‑1 (MQ=255)

                                                                      CCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACg                               >  2:1253496‑M1/1‑100 (MQ=255)

                                                                       CGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACgg                              <  2:2452853‑M1/100‑1 (MQ=255)

                                                                           TGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCgag                          >  2:3018107‑M1/1‑100 (MQ=255)

                                                                            GACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCgagg                         >  1:3736898‑M1/1‑100 (MQ=255)

                                                                            GACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCgagg                         >  2:1720123‑M1/1‑100 (MQ=255)

                                                                                  ttAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTc                   <  1:1399158/100‑1 (MQ=255)

                                                                                   tAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCgaggaccgc                    >  2:2599498/1‑94 (MQ=255)

                                                                                   naaCGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCg                  >  1:2103547/2‑100 (MQ=255)

                                                                                     aCGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGAt                <  2:3238057/100‑1 (MQ=255)

                                                                                      cGTTTCATCCGGCGTTCCTTGCAAGCGTGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGAtc               <  2:1385091/100‑1 (MQ=255)

                                                                                      cGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGAtc               <  2:1073818/100‑1 (MQ=255)

                                                                                      cGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGAtc               <  2:2754398/100‑1 (MQ=255)

                                                                                       gTTTCATCCGGCGTTCCTTGCACGCGGGAGGAAACAGCGCCATACCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGAtct              <  2:1502845/100‑1 (MQ=255)

                                                                                         ttCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCa            <  2:784948/100‑1 (MQ=255)

                                                                                          tcatccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCaa           >  2:1651418‑M2/10‑100 (MQ=255)

                                                                                           catccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAac          >  1:2581907‑M2/9‑100 (MQ=255)

                                                                                            atccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAaca         <  2:3768927‑M2/93‑1 (MQ=255)

                                                                                            atccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAaca         >  2:3526856‑M2/8‑100 (MQ=255)

                                                                                            atccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAaca         >  1:3258743‑M2/8‑100 (MQ=255)

                                                                                            atccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAaca         >  2:1375939‑M2/8‑100 (MQ=255)

                                                                                            agcctgCGTTCATTGCAGGCGGGAGGAAATAGCGCCCTCGCCGGCATGTTACTTTGGGTTATCACCGCTGCAGGCAGGGCGAGGAGAGTCGATCTCat           <  1:1562757/93‑2 (MQ=255)

                                                                                             tccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAacac        >  1:19408‑M2/7‑100 (MQ=255)

                                                                                              ccggcGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACg       >  1:2518030‑M2/6‑100 (MQ=255)

                                                                                                  cGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCTGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACGATCg   <  1:3794593‑M2/99‑1 (MQ=255)

TTAATCGCAACGCATGAATAAACAACGGTTTCAAGGGAATTTTTATCGTTTCCGGGGGTTGAATACGCTGCCGGATGACGACTTAACGTTTCATCCGGCGTTCCTTGCAAGCGGGAGGAAACAGCGCCCTCCCCGGCATATTACTCTTCGCTATCACCGCTGCTGGCACGGCGAGGAGAGTCGATCTCAACACGATCGA  >  NC_000913/3163575‑3163773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.