New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620220NA (NA)20 (0.150) 9/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCAC  >  NC_000913/3620156‑3620354
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tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                                                     >  2:2983687‑M2/1‑100 (MQ=255)
 ggCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCTGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCn                                                                                                    >  1:2032950‑M2/1‑99 (MQ=255)
                                                acGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacg                                                     <  2:2711389‑M2/100‑49 (MQ=255)
                                                 cGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacgg                                                    <  1:355191‑M2/100‑50 (MQ=255)
                                                           tACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacacca                                          <  1:783417‑M2/100‑60 (MQ=255)
                                                           tACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacacca                                          <  1:783600‑M2/100‑60 (MQ=255)
                                                            aCCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccac                                         <  1:1243995‑M2/100‑61 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGGCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  1:2020986‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc                                        <  1:2914949‑M2/100‑62 (MQ=255)
                                                             ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatac                                              <  1:173574‑M2/94‑56 (MQ=255)
                                                              cGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccg                                       <  2:868916‑M2/100‑63 (MQ=255)
                                                              cGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccg                                       <  1:1474321‑M2/100‑63 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  2:2122597‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  2:888164‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  2:1199943‑M2/100‑64 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccac                                         <  1:882189‑M2/97‑61 (MQ=255)
                                                               ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatctatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc                                      <  1:409019‑M2/100‑64 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcca                                    <  2:2250775‑M2/100‑66 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcca                                    <  1:161780‑M2/100‑66 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcca                                    <  2:3339645‑M2/100‑66 (MQ=255)
                                                                 ggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgcca                                    <  1:3017664‑M2/100‑66 (MQ=255)
                                                                        tggtggCGCACCGTCACCATCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgc                           <  2:3248454‑M2/100‑75 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagctc       >  2:3520127‑M2/1‑6 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       >  2:3130010‑M2/1‑6 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       <  2:3495842‑M2/100‑95 (MQ=255)
                                                                                              ccggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgc       <  1:1175647‑M2/100‑95 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      <  1:2520930‑M2/100‑96 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      <  1:1598510‑M2/100‑96 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      <  2:894742‑M2/100‑96 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      <  2:2726143‑M2/100‑96 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      >  2:1400835‑M2/1‑5 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      <  2:131436‑M2/100‑96 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      >  1:296516‑M2/1‑5 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgca      <  1:3015975‑M2/100‑96 (MQ=255)
                                                                                               cggccccggtatttatcatcgtaagtaaagctgagcacctgtttgccactacggtcatacaccaccgccaattcgccgcgtggcgtccagccatagcgca      <  1:2279217‑M2/100‑96 (MQ=255)
                                                                                                ggcctcggtatgtatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtgacgtccagccatagcgcac     <  1:2522715‑M2/100‑97 (MQ=255)
                                                                                                ggccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcg        >  1:3053683‑M2/1‑4 (MQ=255)
                                                                                                 gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc    >  1:2590396‑M2/1‑3 (MQ=255)
                                                                                                 gccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc    >  2:3156163‑M2/1‑3 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatataccaccgccagttcgccgcgtggcgtccagccatagcgcacga   <  1:2450830‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  1:2450845‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  1:1774086‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcacca   <  2:1164559‑M2/100‑99 (MQ=255)
                                                                                                  ccccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcagacaccaccgccagttcgccgcgtggcgtccagccatagcgcacc    >  1:419566‑M2/1‑2 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggttatacaccaccgccagttcgccgcgtgtcttccagcgatagctcagcag  <  2:3415850‑M2/100‑100 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccag  <  2:1836572‑M2/100‑100 (MQ=255)
                                                                                                   cccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgccagttcgccgcgtggcgtccagccatagcgcaccag  <  1:1240766‑M2/100‑100 (MQ=255)
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TGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAAGACCGCATCAC  >  NC_000913/3620156‑3620354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.